| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,086,750 – 17,086,847 |
| Length | 97 |
| Max. P | 0.657257 |
| Location | 17,086,750 – 17,086,847 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.03 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17086750 97 + 23771897 CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCUCUCUAGGUGGUAAAAGAUACUCCA-ACCCCAUCGUGCA-CCCCACA----CACUUA .....(((((..(((((((....((....))((......))...........)))))))...)))))....-........(((..-.....))----)..... ( -13.60) >DroSec_CAF1 45171 98 + 1 CACUCGUAUUCGUAUCAUCACAUGAAUAUUCGCUUAUUUGCAUCUCUCUCGAGGUGGUAAAAGAUACUCCAUACUCCAUCAUGCC-CCCCACA----CGCUUA .....((((..(((((.......(((((......))))).((((((....))))))......)))))...))))...........-.......----...... ( -14.90) >DroSim_CAF1 47740 99 + 1 CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCUCUCGAGGUGGUAAAAGAUACUCCAUACCCCAUUGUGCCAUCCCACA----CACUUA .....((((..(((((..(((((((........)))))))((((((....))))))......)))))...)))).....((((........))----)).... ( -18.60) >DroEre_CAF1 44832 81 + 1 CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCUCUCGAGGUG-UAAAAGAUACUCCA-ACCCCAUCGU--------------------A ...........(((((.((....))...........((((((((((....))))))-)))).)))))....-..........--------------------. ( -16.20) >DroYak_CAF1 47637 95 + 1 CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCUCUCGAGGUGGUAAAAGAUACUCCA-ACCCCAUCGUGCU---CCACA----CACUUA ...........(((((..(((((((........)))))))((((((....))))))......)))))....-........(((..---...))----)..... ( -17.10) >DroAna_CAF1 44990 96 + 1 CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCCCUCGAGGUGGCAAAAGAUAC--CA-GCCUCG-CUUCCU---UCACAUCCCUGCCUA .....((((((((........))))))))..((......))........((((((((.........)--))-.)))))-......---............... ( -15.90) >consensus CACUCGUAUUCGUAUCAUCAAAUGAAUAUUCGCUUAUUUGCAUCUCUCUCGAGGUGGUAAAAGAUACUCCA_ACCCCAUCGUGCC___CCACA____CACUUA ...........(((((..(((((((........)))))))((((((....))))))......))))).................................... (-13.53 = -13.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:00 2006