Locus 6377

Sequence ID 3L_DroMel_CAF1
Location 17,069,547 – 17,069,643
Length 96
Max. P 0.786053
window10217

overview

Window 7

Location 17,069,547 – 17,069,643
Length 96
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 78.85
Mean single sequence MFE -21.47
Consensus MFE -14.53
Energy contribution -14.53
Covariance contribution 0.01
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value 0.57
SVM RNA-class probability 0.786053
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17069547 96 - 23771897
UUUGAAUACUUAUCGUUGUGGAUUUGAAACGAUAAGGUUUUUUGAAACGCCAUUAAUGGUGUUUAAAAAAUUUAUAAAUA--------AGCAAGUAGUCCUUUA
((((....(((((((((..........)))))))))((((((((((.(((((....))))))))))))))).........--------..)))).......... ( -21.90)
>DroEre_CAF1 27388 104 - 1
CUGGAAUCCUUAUCGUUGUGGACUUAAAACGAUAAGGUUCUUUUGAACGCCAUUACUGGUGCCUAAAUAAUUAAUAAAAACAACAAGCUGUACGCAGUCCUUUA
..((((.((((((((((..........))))))))))))))((((..(((((....)))))..))))...................((((....))))...... ( -23.70)
>DroYak_CAF1 29189 103 - 1
UUGGAAUACUUAUCGUUGUGGAUUUAAGAUGAUAAUGUU-UUUUGAACGCCAUUAAUGGCGCCUAAAUUAUUUAUAAAAACAACAAUCAGUACAUAGUCCUUUA
..(((.((((.((.(((((...(((((((((((...(((-(...))))((((....))))......))))))).)))).))))).)).)))).....))).... ( -18.80)
>consensus
UUGGAAUACUUAUCGUUGUGGAUUUAAAACGAUAAGGUU_UUUUGAACGCCAUUAAUGGUGCCUAAAUAAUUUAUAAAAACAACAA_CAGUACGUAGUCCUUUA
..(((...(((((((((..........)))))))))...........(((((....)))))....................................))).... (-14.53 = -14.53 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:55 2006