| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,046,798 – 17,046,888 |
| Length | 90 |
| Max. P | 0.662749 |
| Location | 17,046,798 – 17,046,888 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -14.37 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17046798 90 + 23771897 CGACUCCUCAUGGCAAUAAGGUCGUACAUC----------GUACAUCGUCCGACUGUACAAAAAGUCGCCAUCGAUGUCCUCGUCCUG-------------------CCCCAUCCUCCA ...........(((((..(((.(((((...----------))))((((..(((((........)))))....))))).)))..)..))-------------------)).......... ( -20.10) >DroPse_CAF1 14659 84 + 1 CGACGACUCAUGGCAAUAAGGUCGUAC-----------------AUCGUCCAACUGUACAAAAAGUCGCCAUCGCCGUCGUUGUCGUUGC-----------------CGUUGUCCUCG- (((.(((..((((((((..((.((...-----------------..)).))....(.((((...(.(((....).)).).))))))))))-----------------))).))).)))- ( -22.10) >DroSec_CAF1 14389 92 + 1 CGACUCCUCAUGGCAAUAAGGUCGUACAUC----------GUACAUCGUCCGACUGUACAAAAAGUCGCCAUCGAUGUCCUCGUCCUGUC-----------------CCCCAUCCUCCG .........((((.....(((.((.(((((----------(.........(((((........)))))....))))))...)).)))...-----------------..))))...... ( -20.62) >DroEre_CAF1 14033 109 + 1 CGACUCCUCAUGGCAAUAAGGUCGUACAUC----------GUACAUCGUCCGACUGUACAAAAAGUCGCCAUCGAUGUCCUCGUCCUGCCUCAUCCUACCCAUCCUGCCCCAUCCUCCG ...........(((((..(((.(((((...----------))))((((..(((((........)))))....))))).)))..)..))))............................. ( -20.50) >DroYak_CAF1 15249 99 + 1 CGACUCCUCAUGGCAAUAAGGUCGUACAUCGUACAUC---GUACAUCGUCCGACUGUACAAAAAGUCGCCAUCGAUGUCCUCGUCCUGCCA-----------------CCCAUCCUCCG ..........(((((....((.(((((...))))...---(.((((((..(((((........)))))....)))))).)..).)))))))-----------------........... ( -23.70) >DroAna_CAF1 13073 90 + 1 CGACUUCUCAUGGCAAUAAGGUCGUACAUCGUACAUCCUAGUACAUCGUCCGACUGUACAAAAAGUCGCCGUGGC------CAUCGUGUC-----------------CUCCAU------ (((....(((((((....(((..((((...))))..))).(((((((....)).)))))........))))))).------..)))....-----------------......------ ( -23.50) >consensus CGACUCCUCAUGGCAAUAAGGUCGUACAUC__________GUACAUCGUCCGACUGUACAAAAAGUCGCCAUCGAUGUCCUCGUCCUGCC_________________CCCCAUCCUCCG .(((.....(((((.....((.((......................)).))((((........)))))))))....)))........................................ (-14.37 = -14.90 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:46 2006