Locus 6370

Sequence ID 3L_DroMel_CAF1
Location 17,045,724 – 17,045,817
Length 93
Max. P 0.775669
window10206

overview

Window 6

Location 17,045,724 – 17,045,817
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 91.69
Mean single sequence MFE -27.37
Consensus MFE -24.49
Energy contribution -24.77
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.54
SVM RNA-class probability 0.775669
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17045724 93 + 23771897
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU
.((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90)
>DroSec_CAF1 13354 93 + 1
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCCC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU
.((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90)
>DroSim_CAF1 14813 93 + 1
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU
.((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90)
>DroEre_CAF1 13039 93 + 1
GCUUGCCAAAUGAAAUUCAUAGCAUACUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUAUAUUUAUACAGGCAAGAUUGCUUAAGGA-GAA---CUU
.((((((..(((.....)))........(((((.((((((..-.)))))))))))...............))))))............-...---... ( -24.90)
>DroYak_CAF1 14327 93 + 1
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUAUAUUUGUACAGGCGAGAUUGCUUAAGGA-GAC---CUU
.((((((..(((.....)))...((((.(((((.((((((..-.)))))))))))..)))).........)))))).........(..-..)---... ( -28.10)
>DroAna_CAF1 12152 98 + 1
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGGCGCUGCCGGGGCUGCUCUAAACUCUAUAUUUGUGCAGGCGAGAUUGCCUAAACGGGAAUGGCUU
((((((((((((.......(((..((((..(((......)))..))))..))).......)))))).))))))(..(((.((.....)).)))..).. ( -30.54)
>consensus
GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC_GGCUGCGCUGAACUCUAUAUUUGUACAGGCAAGAUUGCUUAAGGG_GAA___CUU
.((((((..(((.....)))........(((((.((((((....)))))))))))...............))))))...................... (-24.49 = -24.77 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:45 2006