| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,042,106 – 17,042,217 |
| Length | 111 |
| Max. P | 0.899363 |
| Location | 17,042,106 – 17,042,217 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Mean single sequence MFE | -56.03 |
| Consensus MFE | -26.46 |
| Energy contribution | -26.55 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17042106 111 + 23771897 GCAUGGCCAGCAGUUCGCUGAGCGGAUAGUGGGCGGCGGCCAGAGCGGCAUUCUGACGCAAUUGGGCCUGUUGCAGCUG---CGCGGCG---GCGGCAGCAGCGGGCACAUUGGCAG ((.(((((.((.((((((((......)))))))).)))))))..))...........((...((.(((((((((.((((---(......---))))).))))))))).))...)).. ( -53.30) >DroVir_CAF1 4516 114 + 1 GCAUCGCCAGCAGCUCGCUGAGCGGAUAAUGGGCGGCGGCAAGCGCGGCGUUUUGACGCAGCUGCGCCUGCUGGGCAGC---CGCAGCAGCAGCUGCUGCUGCUGGCGCUGACGCAG .((.(((((((((((((((.(........).)))))(((((.(((((((((......)).))))))).)))))((((((---.((....)).)))))))))))))))).))...... ( -62.10) >DroGri_CAF1 10364 111 + 1 GCAUGCCCAGAAGCUCACUGAGCGGAUAAUGUGCAGCAGCAAGUGCUGCAUUCUGACGCAAUUGCGCCUGCUGGGCAGC---AGCGGCU---GCAGCUGCUGCGGGCGCUGUGGCCG ((.(((((((..((((...))))((.....((((((((.....)))))))).....(((....)))))..)))))))))---..((((.---.((((.((.....))))))..)))) ( -55.40) >DroWil_CAF1 13984 111 + 1 GCAUGGCCAACAGCUCGCUAAGAGGAUAAUGAGCGGCUGCCAGUGCAGCAUUCUGACGCAAUUGCGCCUGCUGUUGGAC---GACAGCA---GCGGCUGCUGCCGGCGCCGUUGCUG (((((((....(((.((((............))))))))))).)))...........(((((.(((((.(((((((...---..)))))---))(((....)))))))).))))).. ( -50.00) >DroMoj_CAF1 10705 105 + 1 GCAUCGCCAGCAGUUCGCUGAGCGGAUAGUGGGCAGCGGCGAGGGCUGCAUUUUGGCGCAGCUGCGCCUGCUGGGCGGC---UGCUGCG---GCCGCCGCUGCCGGCGCUG------ ((.((((((((.....)))).))))...((.(((((((((...(((((((.......((((((((.((....)))))))---)))))))---)))))))))))).))))..------ ( -66.21) >DroAna_CAF1 8952 114 + 1 GCAUGGCCAGGAGUUCGCUUAGCGGAUAAUGGGCUGCUGCAAGGGCCGCAUUUUGUCGCAACUGAGCUUGCUGUGCCACCGCUGCAGCU---GCCGCGGCGGCCGGGGCAUUGGCAG ((...(((..(((((((.((.((((..((((((((........)))).))))...)))))).))))))).(((.(((.((((.((....---)).)))).)))))))))....)).. ( -49.20) >consensus GCAUGGCCAGCAGCUCGCUGAGCGGAUAAUGGGCGGCGGCAAGGGCGGCAUUCUGACGCAACUGCGCCUGCUGGGCAGC___CGCAGCA___GCCGCUGCUGCCGGCGCUGUGGCAG .(((..((..(((....)))...))...)))((((((((((......((........))......((.(((((...........)))))...))))))))))))............. (-26.46 = -26.55 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:41 2006