Locus 6350

Sequence ID 3L_DroMel_CAF1
Location 16,992,212 – 16,992,313
Length 101
Max. P 0.611529
window10178

overview

Window 8

Location 16,992,212 – 16,992,313
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 93.40
Mean single sequence MFE -24.50
Consensus MFE -22.86
Energy contribution -22.87
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 0.16
SVM RNA-class probability 0.611529
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16992212 101 - 23771897
UAAGGCCACGGUUAAGUCUAAUUAGGUGUUGGGCAGGCAAAAAGGCCAUUGGCAAGCGAUUUUCGUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA
....((((.......(((((((.....))))))).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ ( -25.30)
>DroSim_CAF1 3769 101 - 1
UAAGGCCACGGUUAAGUCUAAUUAAGAGUUGGACAGGCAAAAGGGCCAUUGGCAAGCGAUUUUCGCGGUGAAAAAUCAUCAACAAGAUUAGUUAACAAUGA
...((((...(((..(((((((.....))))))).))).....)))).(((((..(((.....)))(((((....)))))..........)))))...... ( -26.40)
>DroYak_CAF1 3967 101 - 1
UAAGGCCACGGUUAAGUCUAUUUAAGAGUUGGGCAGUCAAAAGGGACAUUGGCAAGCGAUUUUCCUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA
....((((.(.((((.(((.....))).)))).).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ ( -21.80)
>consensus
UAAGGCCACGGUUAAGUCUAAUUAAGAGUUGGGCAGGCAAAAGGGCCAUUGGCAAGCGAUUUUCGUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA
....((((.......(((((((.....))))))).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ (-22.86 = -22.87 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:17 2006