Locus 6312

Sequence ID 3L_DroMel_CAF1
Location 16,863,006 – 16,863,097
Length 91
Max. P 0.639717
window10126

overview

Window 6

Location 16,863,006 – 16,863,097
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 93.02
Mean single sequence MFE -31.75
Consensus MFE -29.59
Energy contribution -29.82
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.02
Structure conservation index 0.93
SVM decision value 0.22
SVM RNA-class probability 0.639717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16863006 91 + 23771897
-----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCAAUCGCC
-----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.70)
>DroSec_CAF1 52516 91 + 1
-----UCCGUGUGAGUGAAUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAAAGGUGCGACUAUCGCC
-----.((((((((((((....)))))....(((((...(((....)))))))).)))))(((((........)))))...)).(((.....))). ( -28.20)
>DroSim_CAF1 56201 91 + 1
-----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCUAUCGCC
-----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.20)
>DroEre_CAF1 53475 90 + 1
-----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCAG-UUUAUUGCAUAGGUGCGGCUAUCGCC
-----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((....-...)))))....)))))))....)). ( -32.90)
>DroYak_CAF1 52780 91 + 1
-----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCCCUUUUAUUGCAUAGGUGCGGCUAUCGCC
-----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.20)
>DroAna_CAF1 50411 96 + 1
GUGGAUGGAUGUGAGUGAGUGCUCACUGUCACGGGCUCUGGUUUUUAUCGUCCGCCACACGCAGUUCACAUUUAUUGCAUAGGUGCGGCUAUCGCC
((((.((((((.(((..((.((((........)))).))..)))....))))))))))..(((((........)))))........(((....))) ( -29.30)
>consensus
_____UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCUAUCGCC
........(((..(((((....)))))..)))((((...(((....)))))))((((((((((((........)))))....)))))))....... (-29.59 = -29.82 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:23 2006