Locus 6307

Sequence ID 3L_DroMel_CAF1
Location 16,826,264 – 16,826,368
Length 104
Max. P 0.992708
window10120

overview

Window 0

Location 16,826,264 – 16,826,368
Length 104
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 78.09
Mean single sequence MFE -32.44
Consensus MFE -25.30
Energy contribution -25.36
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.34
Structure conservation index 0.78
SVM decision value 2.35
SVM RNA-class probability 0.992708
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16826264 104 + 23771897
UGGCACUUCUGUGACCACUGCCAGAUGUUAGUGCCGGUAAAGUAUUUGCCAUAGAAUAU-----UUCUGUAUAUCCACGAAAAAGCAUUUGUAAAAAGUGGAUGUGCGG
.((((((((((.(.......)))))....))))))(((((.....))))).........-----..((((((((((((......((....)).....)))))))))))) ( -32.70)
>DroSim_CAF1 16764 109 + 1
UGGCACUUCUGUGACCACUGCCAGAUUUUAGUGCCGGUAAAGUAUUCGACAUAGAAUAUGUUAUAUCUGUAUAUCCACGACAAAGCAUUUGUAAAAAGUGGAAGUGCGG
.((((((((((.(.......)))))....)))))).((((.((((((......)))))).))))..((((((.(((((.((((.....)))).....))))).)))))) ( -32.30)
>DroEre_CAF1 15588 103 + 1
UGGCACUUCUGUGACCAGUGCCAGAUGCUAGUGCCGGUAAAUAGUUCGCCAUGGAAUAU--AGUAUCUGUAUCUCCACGCAAAAUCA----CGAAAAGUGGAGGUGUGG
.((((((.........))))))((((((((...(((((.........)))..))....)--))))))).(((((((((.........----......)))))))))... ( -32.06)
>DroYak_CAF1 15489 93 + 1
UGGCACUUCUGUGACCACUGCCAGAUGCUUGUGCCGGUAAGUAG--------------U--AGUAUCUGUAUCUCCACGCAAAAGCAUUUGUGAAAUGUGGAGGUGCGG
((((((....))).)))((((((((((((..(((......))).--------------.--)))))))).(((((((((.....((....))....))))))))))))) ( -32.70)
>consensus
UGGCACUUCUGUGACCACUGCCAGAUGCUAGUGCCGGUAAAGAAUUCGCCAUAGAAUAU__AGUAUCUGUAUAUCCACGAAAAAGCAUUUGUAAAAAGUGGAGGUGCGG
.((((((((((.(.......)))))....))))))...............................((((((((((((...................)))))))))))) (-25.30 = -25.36 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:17 2006