| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 248,625 – 248,727 |
| Length | 102 |
| Max. P | 0.882175 |
| Location | 248,625 – 248,727 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.74 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -19.80 |
| Energy contribution | -20.39 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 248625 102 + 23771897 -AGUUU--CCUCCCCUCGCAGCUCAUUUCCAAUGCCAUACGCCAUGGGGACCGACACCAAGCCACCAUGGAACUGGCGGACUAUUGGCUGCUGGAAAAGCAACUG -.((((--..(((....((((((.((.(((...((((....((((((((...(....)...)).))))))...)))))))..)).)))))).))).))))..... ( -33.50) >DroGri_CAF1 20323 104 + 1 -AAGCUAUCAAAUCGAUACAGCUAAUAUCAAAUGCAAUACGCUAUGGCGAUCGACACAAGGCGACCAUGGAAUUAGCAGACUAUUGGCUGCUGGAGAAGCAGCUG -.((((.............((((((((.....((((((...((((((((.((.......)))).)))))).))).)))...))))))))(((.....))))))). ( -27.40) >DroEre_CAF1 16601 102 + 1 -AAAUG--CAUCUCCUCGCAGCUUAUUUCCAAUGCCAUACGCCAUGGGGACCGGCACCAAGCCACCAUGGAACUGGCGGACUAUUGGCUGCUGGAAAAGCAACUG -...((--(...(((..((((((.((.(((...((((....((((((.....(((.....))).))))))...)))))))..)).)))))).)))...))).... ( -37.70) >DroWil_CAF1 18885 100 + 1 U-AAUA--AAUU--UUUGCAGUUAAUAUCGAAUGCCAUACGUCAUGGGGACCGACACAAGCCGACAAUGGAGUUGGCCGAUUAUUGGCUGCUGGAAAAGCAACUA .-....--..((--(..(((((((((((((..........(((..(....).)))....((((((......))))))))).))))))))))..)))......... ( -29.30) >DroYak_CAF1 16555 102 + 1 -AAAUU--AAUUACCUUGCAGCUCAUUUCCAAUGCCAUUCGCCAUGGGGACCGACACCAAGCCACCAUGGAACUGGCGGACUAUUGGCUGCUGGAGAAGCAACUG -.....--.....((..((((((.((.(((...((((....((((((((...(....)...)).))))))...)))))))..)).)))))).))........... ( -32.10) >DroMoj_CAF1 19793 96 + 1 -AAAUU--------CUUUCAGCUCAUUUCAAAUGCUAUACGCCAUGGCGAUCGACACAAAGCAACCAUGGAGCUGGCGGACUACUGGCUGCUGGAGAAACAACUU -...((--------((((((((((.........((.....))(((((.................)))))))))))((((.(....).)))).))))))....... ( -21.93) >consensus _AAAUU__CAUC_CCUUGCAGCUCAUUUCCAAUGCCAUACGCCAUGGGGACCGACACAAAGCCACCAUGGAACUGGCGGACUAUUGGCUGCUGGAAAAGCAACUG ..............((.((((((.........(((((....((((((((............)).))))))...))))).......)))))).))........... (-19.80 = -20.39 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006