| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,756,721 – 16,756,811 |
| Length | 90 |
| Max. P | 0.664037 |
| Location | 16,756,721 – 16,756,811 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.85 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -20.44 |
| Energy contribution | -20.42 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16756721 90 + 23771897 AUCCUGGGUGGCAAUGCCCACGGGACAGGUGUUCAAGUGACACUUGCGCAUCAUAGUGCAGCCUUUAAAGA---------GUAU----UAUACUUAUAACACA-- .((((((((......))))).)))....(((((.(((((....((((((......)))))).(((....))---------)...----..)))))..))))).-- ( -23.30) >DroGri_CAF1 5947 95 + 1 AUCCUGUGUGGCAAUGCCUACGGGACAGGUGUUCAAAUGACACUUGCGCAUCAUGGUGCAGCCUGCAG---AAGAAGAGAUUAA----UCAGCUUG-AGCACA-- .(((((((.(((...))))))))))...((((((((.(((...((((((......)))))).((....---.))..........----)))..)))-))))).-- ( -30.00) >DroSec_CAF1 5925 90 + 1 AUCCUGGGUGGCAAUACCCACGGGGCAGGUGUUCAAGUGACACUUGCGCAUCAUGGUGCAGCCUUCAAAGA---------UUAU----UAUGCUUAUAAUACA-- .(((((((((....)))))).)))(((((((((.....)))))))))((((....))))............---------.(((----(((....))))))..-- ( -28.50) >DroSim_CAF1 6215 90 + 1 AUCCUGGGUGGCAAUGCCCACGGGGCAUGUGUUCAAGUGACACUUGCGCAUCAUGGUGCAGCCUUCAAAGA---------UUAU----UAUGCUUACAAUACA-- ..(((((((......))))).))((((((...((...(((...((((((......))))))...)))..))---------....----)))))).........-- ( -24.10) >DroEre_CAF1 6184 94 + 1 GUCCUGAGUGGCAAUGCCCACGGGACAGGUGUUCAAGUGACACUUGCGCAUCAUGGUGCAGCCUUUGGAAA---------UUAUAUAGCAU--UUGUAACACGAA ((((((.(.(((...)))).))))))..(((((((((((.(..((((((......))))))((...))...---------.......))))--))).)))))... ( -29.90) >DroYak_CAF1 5925 90 + 1 AUCCUGAGUGGCGAUGCCCACGGGACAGGUGUUCAAGUGACACUUGCGCAUCAUGGUGCAGCCUUUAAAAA---------UGAU----UAU--UUGUAAAACGAA .(((((.(.(((...)))).)))))((((((((.....)))))))).((((....))))............---------....----...--............ ( -22.50) >consensus AUCCUGGGUGGCAAUGCCCACGGGACAGGUGUUCAAGUGACACUUGCGCAUCAUGGUGCAGCCUUCAAAGA_________UUAU____UAUGCUUAUAACACA__ .(((((.(.(((...)))).)))))((((((((.....)))))))).((((....)))).............................................. (-20.44 = -20.42 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:52 2006