Locus 6283

Sequence ID 3L_DroMel_CAF1
Location 16,734,694 – 16,734,799
Length 105
Max. P 0.940644
window10077

overview

Window 7

Location 16,734,694 – 16,734,799
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 91.31
Mean single sequence MFE -33.35
Consensus MFE -27.38
Energy contribution -28.62
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.82
SVM decision value 1.31
SVM RNA-class probability 0.940644
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16734694 105 - 23771897
GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCAGACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU
..(((((...(((((.....))))).))))).((((.(((......)))...-(((((....))))).....))))..(((((.(((((....)))).).))))). ( -34.50)
>DroSec_CAF1 41856 105 - 1
GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCAGACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU
..(((((...(((((.....))))).))))).((((.(((......)))...-(((((....))))).....))))..(((((.(((((....)))).).))))). ( -34.50)
>DroSim_CAF1 46334 105 - 1
GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCACACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU
(((((((...(((((.....))))).))))).......((......))))..-(((((....)))))...........(((((.(((((....)))).).))))). ( -31.80)
>DroAna_CAF1 36949 96 - 1
GCGCCUCCAAUUUCCAGGU-------GAGGCUCCA---AAGCGAAAUCGCAAGACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU
..((((((.........).-------)))))..((---(((((....)))..((((((....))))))..))))....(((((.(((((....)))).).))))). ( -32.60)
>consensus
GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCACACAUCGAGGGAAAUCGCAA_ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU
..(((((...(((((.....))))).))))).................((((.(((((....)))))....))))...(((((.(((((....)))).).))))). (-27.38 = -28.62 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006