| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,724,091 – 16,724,197 |
| Length | 106 |
| Max. P | 0.730108 |
| Location | 16,724,091 – 16,724,197 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.16 |
| Mean single sequence MFE | -31.05 |
| Consensus MFE | -19.78 |
| Energy contribution | -21.37 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16724091 106 - 23771897 GGGAAGGUGGGCGGGAUGAAAGGGAGCGAGAGCGGGAGGGACGUUUGUCGUGUGCGUGAUGCGCAUGAGCGAAGCGUCAUUGCGCCUUAAAUGGGAGCAGCAAAAC ......(((((((.(((........((....))......((((((((((((((((.....)))))))).).)))))))))).)))))....((....))))..... ( -33.80) >DroVir_CAF1 26536 94 - 1 G---GAGGAGGCGG--GGA-GAGCA-UGAGACAAG----GAAC-AAGGCAUGUGCGUGAUGCGCAUGAGCGGCGCGUCAUUGCGCCUUAAAUGGGAGCAGGGCGGC .---...(((((..--...-..(((-((...(...----....-..).)))))(((((((((((.......)))))))).)))))))).................. ( -27.10) >DroSec_CAF1 31503 86 - 1 ----AGGUGGGCGG----------------ACUGGGAGGGACGUUUGUCGUGUGCGUGAUGCGCAUGAGCGAAGCGUCAUUGCGCCUUAAAUGGGAGCAGCACAAC ----.((..((((.----------------.((....))..))))..)).((((((((((((((....))...)))))))(((.(((.....))).)))))))).. ( -33.60) >DroSim_CAF1 36036 87 - 1 G---AGGUGGGCGG----------------ACUGGGAGGGACGUUUGUCUUGUGCGUGAUGCGCAUGAGCGAAGCGUAAUUGCGCCUUAAAUGGGAGCAGCACAAC (---(((..((((.----------------.((....))..))))..))))((((....(((((.........)))))..(((.(((.....))).)))))))... ( -31.30) >DroYak_CAF1 34876 101 - 1 ----AGGUGGGCGGACUGGGAGGGAGCGGCAGGGGGAGGGAAGU-UGUCGUGUGCGUGAUGCGCAUGAGCGAAGCGUCAUUGCGCCUUAAAUGGGAGCAGCGCAAC ----..(((.((...(((..((((....((((...((.(....(-((((((((((.....)))))))).)))..).)).)))).))))...)))..))..)))... ( -29.10) >DroAna_CAF1 27497 81 - 1 G--------GGAGU-------------GCUAC-AAGGGGGGCGUUUGUCGUGUGCGUGAUGCGCAUGAGCGAAGCGUCAUUGCGCCUUAAAUGGGAGC-GCGCA-- .--------...((-------------(((.(-(...(((((.((((((((((((.....)))))))).))))(((....))))))))...))..)))-))...-- ( -31.40) >consensus G___AGGUGGGCGG_____________G__ACUGGGAGGGACGUUUGUCGUGUGCGUGAUGCGCAUGAGCGAAGCGUCAUUGCGCCUUAAAUGGGAGCAGCACAAC .......................................((((((((((((((((.....)))))))).).))))))).((((.(((.....))).))))...... (-19.78 = -21.37 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:31 2006