| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,723,619 – 16,723,711 |
| Length | 92 |
| Max. P | 0.980645 |
| Location | 16,723,619 – 16,723,711 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -19.02 |
| Energy contribution | -20.15 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16723619 92 - 23771897 GAUGGCUGGAAGGGG---GGGGAGAGGGUCUUCCCUUUAUCCUCCAUACACGUUACCUCCACCUCCGCUAACUUCAUCCCAUUCC-CCACCUUUCG ((.((..((((((((---((((((((((....)))))..))))))......((((.(.........).)))).....))).))))-...))..)). ( -27.60) >DroSec_CAF1 31020 89 - 1 GGUGGCUGGAGGGGA-------UUGGGGUCUUCCCUUUAUCCUCCAUACAUGUUACCUCCACCUCCGCUAACUUCAUCCCUUUCCCCCGCCUUUCG (((((..((((((((-------(.((((....))))...............((((.(.........).))))...)))))))))..)))))..... ( -25.30) >DroSim_CAF1 35554 89 - 1 GGCGGCUGGAGGGGA-------UUGGGGUCUUCCCUUUAUCCUCCAUACACGUUACCUCCACCUCCGCUAACUUCAUCCCUUUCCCCCGCCUUUCG (((((..((((((((-------(.((((....))))...............((((.(.........).))))...)))))))))..)))))..... ( -27.50) >DroYak_CAF1 34407 93 - 1 GGGAGUUGCAGGGAGUUGGAGGGAGGGGGCUACCCUUUAUCCUCCAUAAAAGUUACCUCCACCUCCGCUGACUUUAUCCCUUGCCCC---CUGGCG ((((...((((((((.((((((((((((....))))))...((.......))...)))))).)))).))).)....))))..(((..---..))). ( -37.90) >consensus GGUGGCUGGAGGGGA_______UUGGGGUCUUCCCUUUAUCCUCCAUACACGUUACCUCCACCUCCGCUAACUUCAUCCCUUUCCCCCGCCUUUCG (((((..((((((((.......((((((....)))))).............((((.(.........).))))....))))))))..)))))..... (-19.02 = -20.15 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:30 2006