Locus 6268

Sequence ID 3L_DroMel_CAF1
Location 16,700,543 – 16,700,648
Length 105
Max. P 0.984072
window10055

overview

Window 5

Location 16,700,543 – 16,700,648
Length 105
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 73.64
Mean single sequence MFE -31.36
Consensus MFE -12.97
Energy contribution -13.33
Covariance contribution 0.36
Combinations/Pair 1.21
Mean z-score -2.30
Structure conservation index 0.41
SVM decision value 1.96
SVM RNA-class probability 0.984072
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16700543 105 - 23771897
AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC-CGUAAUGGGAUGCAA-UAUU-------UGCAUCGAUUUGCAUCGCAUGUCCAC
...(((((((((((.(((((.........))))))))))).(((((((((.(.((((...-.)))).).((((((.-....-------))))))))))))))).)))))..... ( -35.20)
>DroPse_CAF1 8000 107 - 1
AUUUAUAGAAGUCUCCGCUUGAAGAUUUGUGGCCUGAACU-AUGCAAAUUAGCUU------UGUAAUUGGAGGCUACUAUGAGUGCCGUGCCAGUGGUGGCAUCGCAUGUCCAC
..((((((.((((((((((...........))).......-.((((((.....))------))))...))))))).))))))((((.((((((....)))))).))))...... ( -33.90)
>DroSec_CAF1 7697 105 - 1
ACUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUGACGGC-CGUAAUGGGAUGCAA-UAUG-------UGCAACGAUUUGCAUCGCAUGUCCAC
...(((((((((((.(((((.........))))))))))).(((((((((.........(-(......)).((((.-....-------))))..))))))))).)))))..... ( -29.90)
>DroSim_CAF1 8060 105 - 1
AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC-CGUAAUGGGAUGCAA-UAUG-------UGCAACGAUUUGCAUCGCAUGUCCAC
...(((((((((((.(((((.........))))))))))).(((((((((.(.((((...-.)))).)...((((.-....-------))))..))))))))).)))))..... ( -30.60)
>DroYak_CAF1 9230 88 - 1
AUUUAUGCGCU---------------UUGUGGUCAGAAGU-AUGCAAAUUAGUUUACGGCCCGCAAUGCGAUGCAA-CAUC-------A--CUCGAUUGGCAUCGCAUGUCCAC
...(((((((.---------------((((((.(....((-(.((......)).))).).)))))).))(((((..-.(((-------.--...)))..))))))))))..... ( -27.20)
>consensus
AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC_CGUAAUGGGAUGCAA_UAUG_______UGCAACGAUUUGCAUCGCAUGUCCAC
............................((((.((...(((.(((.................))).)))(((((((.....................)))))))...)).)))) (-12.97 = -13.33 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:17 2006