| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,690,404 – 16,690,494 |
| Length | 90 |
| Max. P | 0.529002 |
| Location | 16,690,404 – 16,690,494 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -23.66 |
| Energy contribution | -23.58 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16690404 90 - 23771897 GG------------------AGCAGUAGCCAGGAUGCGGGCAGGAGCAGUCGGAGCAAAGGCGGCAUUAAACUGGUUAAAGUAGUCCAAGCGCUGGCUGCUGGAUACG ..------------------..((((((((((..(((((((....((.(((........))).)).....(((......))).))))..)))))))))))))...... ( -31.80) >DroSim_CAF1 19656 90 - 1 GG------------------AGCAGUAGCCAGGAUGCGGGCAGGAGCAGUCGGACCAAAGGCGGCAUUAAACUGGUUAAAGUAGUCCAAGCGCUGGCUGCUGGAUACG ..------------------..((((((((((..(((((((....((.(((........))).)).....(((......))).))))..)))))))))))))...... ( -31.80) >DroEre_CAF1 12338 90 - 1 GG------------------AGCAGUGGCCAGGAUGCGGGCAGGAGCAGUCGGGGCAAAGGCGGCAUUAAACUGGUUAAAGUAGUCCAAGCGCUGGCUGCUGGACACG ..------------------..(((..(((((..(((((((....((.(((........))).)).....(((......))).))))..))))))))..)))...... ( -30.60) >DroWil_CAF1 32087 108 - 1 GGCAAGGCGGCUAUGCCCGCUGGAGUGGCCACAAAACGUGCAGCUGGGGCUGGAGCAAAGGCAGCAUUAAACUGAUUGAAGUAAUCCAAACGUUGACUACUCGAUAUG .....(((((......))))).(((((((.((.....((((.(((...((....))...))).))))...(((......))).........)).).))))))...... ( -27.60) >DroYak_CAF1 11630 90 - 1 GG------------------AGCAGUAGCCAGGAUGCGGGCAGAAGCAGGCGGAGCAAAGGCGGCAUUAAACUGGUUGAAGUAGUCCAAGCGCUGGCUGCUGGAUACG ..------------------..((((((((((..(((((((....((.(.(........).).)).....(((......))).))))..)))))))))))))...... ( -29.90) >DroAna_CAF1 9577 90 - 1 GG------------------AGUGGCUGCCAGGAUGCGGGCAGGAGCAUUUGGAGCAAAGGCGGCAUUGAACUGGUUGAAGUAGUCCAGACGUUGGCUGCUGGAAACC ..------------------(((.((((((.((((((........))))))........)))))).....)))((((..(((((.((((...)))))))))...)))) ( -28.00) >consensus GG__________________AGCAGUAGCCAGGAUGCGGGCAGGAGCAGUCGGAGCAAAGGCGGCAUUAAACUGGUUAAAGUAGUCCAAGCGCUGGCUGCUGGAUACG ......................((((((((((.....((((....((.(((........))).)).....(((......))).)))).....))))))))))...... (-23.66 = -23.58 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:13 2006