| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,648,575 – 16,648,666 |
| Length | 91 |
| Max. P | 0.590915 |
| Location | 16,648,575 – 16,648,666 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.46 |
| Mean single sequence MFE | -25.29 |
| Consensus MFE | -17.15 |
| Energy contribution | -16.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.590915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16648575 91 + 23771897 CCAGCAAAAGAGUAUACCCAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUUUACU---------UUGCUUUAUCGUUCAAUAUGCGAUGCA ..(((((((((((.....(((.(.((((((((((....))))))))))).)))...)))))..)---------))))).((((((.......)))))).. ( -25.90) >DroEre_CAF1 21652 96 + 1 CCGCGAAAAGAGUAUGCCAAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU----UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUACA .((((...(((((.(((..((.(.((((((((((....))))))))))).))))).))))----)((........))..............))))..... ( -23.90) >DroYak_CAF1 22730 96 + 1 CCGCGAAAAGGGUAUACCCUAAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU----UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUGCA ..((....((((....)))).(((((((((((((....))))))))).))))))..((..----(((........((......)).......)))..)). ( -26.06) >consensus CCGCGAAAAGAGUAUACCCAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU____UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUGCA ...........(((((.....(((((((((((((....))))))))).))))..((((.................))))..........)))))...... (-17.15 = -16.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:50 2006