Locus 625

Sequence ID 3L_DroMel_CAF1
Location 1,848,913 – 1,849,008
Length 95
Max. P 0.942698
window962

overview

Window 2

Location 1,848,913 – 1,849,008
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.53
Mean single sequence MFE -34.10
Consensus MFE -30.02
Energy contribution -28.38
Covariance contribution -1.64
Combinations/Pair 1.36
Mean z-score -1.65
Structure conservation index 0.88
SVM decision value 1.33
SVM RNA-class probability 0.942698
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1848913 95 - 23771897
CUCGCAGCAAUGUGACCGUUCCUCGGGGGUGGUUAAAUACUGUGUGGGGGUGGCUGCCAGCCUGCUUGGUAUAUUUAAGCACACAUCAUUGUUCA
...(.(((((((((((((..((...))..))))))......((((((((.(((...))).)))((((((.....)))))).))))))))))))). ( -33.00)
>DroSec_CAF1 2321 95 - 1
CUCGCAGCAGUGUGACCGUUCCACGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCAUGGUAUAUUUAAGCACACAUCGCUGUUCA
...(((((.(((((((((..((...))..))))...((((((((..(((((....)))..))..)))))))).........))))).)))))... ( -37.50)
>DroSim_CAF1 2337 95 - 1
CUCGCAGCAGUGUGACCGUUCCUCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCAUGGUAUAUUUAAGCACACAUCGCUGUUCA
...(((((.(((((((((..((...))..))))...((((((((..(((((....)))..))..)))))))).........))))).)))))... ( -37.50)
>DroEre_CAF1 2332 95 - 1
CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUAUUGUGUGGGGGUGGCUGCUGGUCUGUUUGGUAUAUUUAGGCAUACAUCACUGUUCA
((((((.(((((((((((..((...))..)))))..))))))))))))(((((.((...(((((...........)))))...)))))))..... ( -29.80)
>DroYak_CAF1 2315 95 - 1
CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUUCCAGCUUGUUUGGUAUAUUGAAGCAUAUGUCACUGUUUA
(.(((((((...((((((..((...))..))))))..))))))).)..((((((.....((((.............))))....))))))..... ( -32.72)
>consensus
CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCUUGGUAUAUUUAAGCACACAUCACUGUUCA
...(.(((((((((((((..((...))..)))))).....(((((.(((.(((...))).)))((((((.....))))))))))).)))))))). (-30.02 = -28.38 +  -1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:04 2006