Locus 6249

Sequence ID 3L_DroMel_CAF1
Location 16,625,884 – 16,625,987
Length 103
Max. P 0.923563
window10021

overview

Window 1

Location 16,625,884 – 16,625,987
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 74.05
Mean single sequence MFE -31.92
Consensus MFE -17.02
Energy contribution -17.14
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -2.00
Structure conservation index 0.53
SVM decision value 1.16
SVM RNA-class probability 0.923563
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16625884 103 + 23771897
GCUGAAUCCAGGGACACUCUGAGUCCUGUAAGCUACCCCGUUAUUACAUCACUUUUCUCACAGUGUUCUGGGAGCACAU-GAGUGAGGGGGUGGCUGUAACGGA
......(((.(((((.......)))))((.(((((((((((....)).((((((..(((.(((....))).))).....-)))))).)))))))))...))))) ( -38.30)
>DroSec_CAF1 10509 94 + 1
GCAGAAUCUAGAGACAGUCUGAGUUUUGUAA----------GAUUAUAUCACUUUUCUCGCAGUGUUCCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA
((((((..((((.....))))..))))))..----------..(((((((((.(..(((((.((((((...)))))).....)))))..))))).))))).... ( -26.10)
>DroSim_CAF1 10823 83 + 1
ACAGAAACUAGAGACCCCGU---------------------CAUUACAUCACUUUUCUCGCAGUGUUUCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA
................((((---------------------...((((((((.(..(((((.((((((...)))))).....)))))..))))).)))))))). ( -22.80)
>DroEre_CAF1 10969 104 + 1
GCAGAUUCAAGCGACUGUCUUAGAUUUGUAAGCUACCCCGUCAUUACAUCACUUUUCUCUCAGUGUUUCGGGAGCACAUUGAGUGAGGGGGUGGCUGUAACAGA
((((((..((((....).)))..)))))).(((((((((.(((((.((........(((((........))))).....))))))).)))))))))........ ( -35.02)
>DroYak_CAF1 10700 87 + 1
-------UAAGCGACUGUCU---------GAGCUACCCCGUCAUUACAUCA-UUUUCUCCCAGUGUUCCGGGAGCACAAUGAGUGAGGGGGUGGCUGUAACGGA
-------.......((((..---------.(((((((((.((((....(((-((..(((((........)))))...))))))))).)))))))))...)))). ( -37.40)
>consensus
GCAGAAUCAAGAGACAGUCU_AG___UGUAAGCUACCCCGUCAUUACAUCACUUUUCUCGCAGUGUUCCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA
...........................................(((((((((.(..(((((.((((((...)))))).....)))))..))))).))))).... (-17.02 = -17.14 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:44 2006