Locus 6232

Sequence ID 3L_DroMel_CAF1
Location 16,578,603 – 16,578,707
Length 104
Max. P 0.953335
window9997

overview

Window 7

Location 16,578,603 – 16,578,707
Length 104
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 87.58
Mean single sequence MFE -24.95
Consensus MFE -20.79
Energy contribution -21.23
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -3.01
Structure conservation index 0.83
SVM decision value 1.43
SVM RNA-class probability 0.953335
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16578603 104 + 23771897
UGUGU--GUGUGUGUUGAAUGCUUUCUCU--CUCUUUUUCUUUCUCUUGCUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA
..(((--((((((.....)))).......--.......((((((....(((((..((((((((((((....)))))))))))).))))).......)))))).))))) ( -25.30)
>DroSec_CAF1 2562 100 + 1
--------UGUGUGUUGAAUGCUUUCUCUCUCUCUUUUUCUUUCUCUUGAUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA
--------.((((...(((....)))............((((((...((..((((((((((((((((....)))))))))))).))))..))....)))))).)))). ( -24.10)
>DroEre_CAF1 2625 102 + 1
UGUGUGUGUGUGUUUUGAAUGCUUUCUCUCUCUCUCUUU------CUUGCUCUUUCUAUAUAUAUAUAUCAGUAUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA
....(((((((.(((((.(((..................------...(((((..((((((((((((....)))))))))))).))))).)))..))))).))))))) ( -25.45)
>consensus
UGUGU__GUGUGUGUUGAAUGCUUUCUCUCUCUCUUUUUCUUUCUCUUGCUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA
........(((((((((((....)))......................(((((..((((((((((((....)))))))))))).)))))...........)))))))) (-20.79 = -21.23 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:19 2006