Locus 6224

Sequence ID 3L_DroMel_CAF1
Location 16,535,800 – 16,535,895
Length 95
Max. P 0.944724
window9986

overview

Window 6

Location 16,535,800 – 16,535,895
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.31
Mean single sequence MFE -27.74
Consensus MFE -18.05
Energy contribution -18.81
Covariance contribution 0.76
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.65
SVM decision value 1.35
SVM RNA-class probability 0.944724
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16535800 95 - 23771897
AAUCGUUUUGGCCAAGUUGUUGCACAAUUUGUAAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGCGUUUGUGUUUGGUUUCUGAUCU-------------------------
..(((....((((((((.(((((((.....))..))))).))))))))....))).((((((((((............)))))))))).......------------------------- ( -26.10)
>DroSec_CAF1 148744 118 - 1
AAUCGUUUUGGCCGAGUUGUUGCACAAGUUGUUAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGAGUUU--UUUUGGCUUCUGAUCUCAAUGGAAAACAAAAUGUACAUAUA
....(((((((((((((.(((((((.....))..))))).))))))))((((((((((((((((.((........))--.)))))).)))....)))))))))))).............. ( -34.60)
>DroSim_CAF1 152162 112 - 1
AAUCGUUUUGGCCAAGUUGUUGCACAAGUUGUUAGGAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGGGUUU--GUUUGGCUUCUGAUCUCAAUGGAAAACAAAAUGU------A
....(((((((((((((.(((.(((.....))..).))).))))))))(((((((((((((((((((........))--))))))).)))....)))))))))))).......------. ( -34.30)
>DroEre_CAF1 146773 100 - 1
AAUCGUUUUGGCCAAGU---UGCACAAGCUGUAAGCAAAUGUUUGGCCCUAUUGAGGGGGCAAAUAAAUU----UUU--CGCUGGCUUCUGAUCUCAUCUGAUAAU-----AU------A
.((((....(((((...---.((....((.....))...((((((.((((.....)))).))))))....----...--.)))))))..)))).............-----..------. ( -22.70)
>DroYak_CAF1 149886 96 - 1
AAUCGUUUUGGCCAAGU---UGCACAAGUUGUAAGCAAUUGUUUGGCCCUAUUGAAGAGGUAAAUAAUGU----UUU--CUUUGGCGUCUGAUCUCAUACAAUAA---------------
.........((((((((---(((((.....))..)))))...)))))).(((((..(((((.....((((----(..--....)))))...)))))...))))).--------------- ( -21.00)
>consensus
AAUCGUUUUGGCCAAGUUGUUGCACAAGUUGUAAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGG_GUUU__CUUUGGCUUCUGAUCUCAAUGGAAAA_______U______A
..(((....((((((((.(((((((.....))..))))).))))))))....)))(((((((((................)))))).))).............................. (-18.05 = -18.81 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:08 2006