Locus 6223

Sequence ID 3L_DroMel_CAF1
Location 16,535,624 – 16,535,715
Length 91
Max. P 0.594541
window9985

overview

Window 5

Location 16,535,624 – 16,535,715
Length 91
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 68.97
Mean single sequence MFE -13.76
Consensus MFE -9.15
Energy contribution -9.28
Covariance contribution 0.13
Combinations/Pair 1.13
Mean z-score -1.16
Structure conservation index 0.66
SVM decision value 0.12
SVM RNA-class probability 0.594541
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16535624 91 - 23771897
UAACAAUGUUGCCAAAAUCGUUCACAU----------UAAUCACCUA-------------------AAUCUAUUUUAAUCCCAGACAAAGAAACAUAUUUUUAAUGGGAUUAGGUAAAUU
........(((((......(....)..----------..........-------------------.........((((((((...(((((......)))))..)))))))))))))... ( -14.70)
>DroSim_CAF1 151942 110 - 1
UAACAAUGUUGCCAAAAUCGUUCACAU----------AAAACACCUACCUACUGGUAAAGUUCUGCAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGCUUAGGUAAAUU
........((((((((((.(((..((.----------..(((...((((....))))..))).))..))).)))))...((((...(((((......)))))..))))....)))))... ( -16.90)
>DroEre_CAF1 146606 78 - 1
----AAUGUACCCAUAAUCCCUUAUAU--------------------------------------UAAGCUAUUUUAAUUCCAGACAAAGAACAAUAUUUUUAAUGGGAUUAGGUAAAUU
----....((((..(((((((....((--------------------------------------((((....)))))).......(((((......)))))...))))))))))).... ( -11.20)
>DroYak_CAF1 149686 108 - 1
UAA-AAUGUACUCAAAAUCCUUCAUUUUCAUUUCAUUAAAUCACUUU---------AAUGUUC-GCAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGCUUAAG-AAAUU
.((-((((..............)))))).....(((((((....)))---------))))..(-....)...((((((.((((...(((((......)))))..)))).)))))-).... ( -12.24)
>consensus
UAA_AAUGUACCCAAAAUCCUUCACAU__________AAAUCACCUA__________________CAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGAUUAGGUAAAUU
.........................................................................((((((((((...(((((......)))))..))))))))))...... ( -9.15 =  -9.28 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:07 2006