| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,531,401 – 16,531,493 |
| Length | 92 |
| Max. P | 0.534110 |
| Location | 16,531,401 – 16,531,493 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 87.87 |
| Mean single sequence MFE | -21.56 |
| Consensus MFE | -17.06 |
| Energy contribution | -17.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16531401 92 + 23771897 GAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCGGAAGAAAUGCCAGCACACACGCACCCACACUGGGAA--AAAAUGUUCACUUAGUGUUAUG ..........((.(((....))).))((..(((....)))...)).((......))....((((((((..--..........)))))))).... ( -19.90) >DroSec_CAF1 144701 91 + 1 AAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCGGAAGAAAUGCCAGCACACACGCACCCACACUGGGAA--AAAAUGUUUACUUAGCGU-GUG ..........((.(((....))).))((..(((....)))...))....(((((((.(((.....)))..--.....(....)...))))-))) ( -26.10) >DroSim_CAF1 147755 91 + 1 GAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCGGAAGAAAUGCCAGCACACACGCACCCACACUGGGAA--AAAAUGUUUACUUAGCGU-GUG ..........((.(((....))).))((..(((....)))...))....(((((((.(((.....)))..--.....(....)...))))-))) ( -26.10) >DroEre_CAF1 142405 84 + 1 GAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCGGAAGAAAUGCCAGCACACACGCACCCACACUGGGAA--AAAUUGCACUCUGA-------- .............(((....))).(((((((((....))).(((..((......)).(((.....)))..--.....)))))))))-------- ( -20.30) >DroYak_CAF1 145531 86 + 1 GAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCAGAAGAAAUGCCAGCACACACGCACCCACACUGGGAAUAAAAUACCACUCUAA-------- .........(((.(((....))).)))((((...............((......)).(((.....)))...........))))...-------- ( -15.40) >consensus GAAUCGAAUCGAAUGGAAAUCCAGUCGGAGUUCGGAAGAAAUGCCAGCACACACGCACCCACACUGGGAA__AAAAUGUUCACUUAG_GU__UG ..........((.(((....))).))((..(((....)))...)).((......)).(((.....))).......................... (-17.06 = -17.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:02 2006