Locus 6203

Sequence ID 3L_DroMel_CAF1
Location 16,462,829 – 16,462,920
Length 91
Max. P 0.632148
window9957

overview

Window 7

Location 16,462,829 – 16,462,920
Length 91
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.11
Mean single sequence MFE -23.37
Consensus MFE -14.32
Energy contribution -14.47
Covariance contribution 0.14
Combinations/Pair 1.24
Mean z-score -1.57
Structure conservation index 0.61
SVM decision value 0.20
SVM RNA-class probability 0.632148
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16462829 91 + 23771897
--------AUCCUCU----------UUAUCCAAUCUUUACUGUGCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG-GU
--------.......----------........................(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -22.30)
>DroSec_CAF1 74321 92 + 1
--------AUCCUCU----------UUACCCAAUCUUCACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGAAAGGUUUAGACGGUUAGUUGGGU
--------.......----------..(((((......((((...(((((.(((((.(((..((.(((.......))).))..))).)))))...))))).))))))))) ( -21.30)
>DroSim_CAF1 76629 91 + 1
--------AUCCUCU----------UUACCCAAUCUUCACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG-GU
--------.......----------........................(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -22.30)
>DroEre_CAF1 75999 99 + 1
AUGAAAAGAUUCUCU----------UUACGCAGUUUGUACUGUUCCUGUCUAUCUUACCGUCAACUUGGCUGUGACAACUUCCCAGCAAAGUUUAGAUGGUUAGUUG-GU
..(.((((.....))----------)).)(((((....)))))......(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -24.60)
>DroYak_CAF1 78849 91 + 1
--------AUUCUCA----------UUACCCAGUGUGUACUGUUCCUGUCUAUCUUACUGUCAACUUGGCUGUGACGACUUCUCAGCAAAGUUUAGAUGGUUAGUUG-GU
--------.......----------.....((((....)))).......(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -19.40)
>DroAna_CAF1 86731 101 + 1
--------GCCGUAUGUGUGCAAUCUUAACUAGUGACUACUGUGGCUGCCUAUCUCAGUGUCAGCCUGGCUGUGACAACUUCUCGGCGAAGAGUAGUCGGUUAGUUG-GU
--------((((((....)))......(((((.((((((((.(((((((((.....)).).)))))..((((.((.....)).))))..).)))))))).).)))))-)) ( -30.30)
>consensus
________AUCCUCU__________UUACCCAAUCUUUACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG_GU
..................................................((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))... (-14.32 = -14.47 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:39 2006