Locus 6189

Sequence ID	3L_DroMel_CAF1
Location	16,392,382 – 16,392,480
Length	98
Max. P	0.999830

overview

Window 8

Location	16,392,382 – 16,392,480
Length	98
Sequences	5
Columns	98
Reading direction	forward
Mean pairwise identity	96.33
Mean single sequence MFE	-29.90
Consensus MFE	-28.46
Energy contribution	-28.30
Covariance contribution	-0.16
Combinations/Pair	1.10
Mean z-score	-2.45
Structure conservation index	0.95
SVM decision value	4.19
SVM RNA-class probability	0.999830
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16392382 98 + 23771897
GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGAAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUAGACCA
((((((.(((((....)))))(((((((..(((..(..(..((.........))..)....)..))).)))))))...............)))))).. ( -29.10)
>DroSec_CAF1 7430 98 + 1
GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA
((((((.(((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).)))))))))))..)))))).. ( -31.50)
>DroSim_CAF1 7495 98 + 1
GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA
((((((.(((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).)))))))))))..)))))).. ( -31.50)
>DroEre_CAF1 9511 98 + 1
GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCCCCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAGGCGGACCA
(((..(((((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).))))))))))).))..))).. ( -28.30)
>DroYak_CAF1 7797 98 + 1
GUUUACUGCCAGCUUUCUGGCAUGGAUGAAGUGCGAAAUUGACGCUCCCCCAGUUGGAUUGUUAUAGCCAUCCACAUUCCAUCAUCCCAUGUAGACCA
((((((((((((....)))))).((((((.(.(((.......))).).....((.((((.((....)).))))))......))))))...)))))).. ( -29.10)
>consensus
GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA
((((((((((((....)))))).((((((.(.(((.......))).).......((((.(((...........))).))))))))))...)))))).. (-28.46 = -28.30 +  -0.16)

alignment

secondary structure

dotplot

Window 9

Location	16,392,382 – 16,392,480
Length	98
Sequences	5
Columns	98
Reading direction	reverse
Mean pairwise identity	96.33
Mean single sequence MFE	-31.26
Consensus MFE	-28.16
Energy contribution	-28.04
Covariance contribution	-0.12
Combinations/Pair	1.08
Mean z-score	-1.58
Structure conservation index	0.90
SVM decision value	1.31
SVM RNA-class probability	0.940796
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16392382 98 - 23771897
UGGUCUACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUUCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC
..((((((...............((((((((((......((((....))))..(((.......))))).))))))))(((((....))))).)))))) ( -32.30)
>DroSec_CAF1 7430 98 - 1
UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC
..((((((((...........))))))))((((......)))).((((((((((((.......)))...))))))..(((((....)))))))).... ( -32.40)
>DroSim_CAF1 7495 98 - 1
UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC
..((((((((...........))))))))((((......)))).((((((((((((.......)))...))))))..(((((....)))))))).... ( -32.40)
>DroEre_CAF1 9511 98 - 1
UGGUCCGCCUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGGGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC
..((((.....))))........((((((((((......)))).....((((.(((.......))).))))))))))(((((....)))))....... ( -30.80)
>DroYak_CAF1 7797 98 - 1
UGGUCUACAUGGGAUGAUGGAAUGUGGAUGGCUAUAACAAUCCAACUGGGGGAGCGUCAAUUUCGCACUUCAUCCAUGCCAGAAAGCUGGCAGUAAAC
..((.(((...((((((((((.(((...........))).)))).........(((.......)))...)))))).((((((....))))))))).)) ( -28.40)
>consensus
UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC
..(((.((...((((((((((.(((...........))).)))).........(((.......)))...))))))..(((((....))))).)).))) (-28.16 = -28.04 +  -0.12)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:21 2006