| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,362,557 – 16,362,650 |
| Length | 93 |
| Max. P | 0.520928 |
| Location | 16,362,557 – 16,362,650 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 85.90 |
| Mean single sequence MFE | -36.12 |
| Consensus MFE | -24.46 |
| Energy contribution | -25.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.520928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16362557 93 + 23771897 UACAGCCCGGAGGUCCAGGUGCUGGAGGUUCCGGCUGCGCCGAGGGUUUAUCCUUCUUCCUGGGCGAAUCCUUGCUCAUUGCAGCUGCCGGAA ..((((((((....)).)).))))....(((((((.((...((((((((..((........))..))))))))((.....)).)).))))))) ( -40.40) >DroSec_CAF1 2816 81 + 1 UGGAGCCCGGAGGUCCAGGAGCUGGAGGUUCCG------------GUUUGUCCUUCUUCCUGGGCGAAUCCUUGCUCAUUGCAGCUGCCGGAA .(((((..(((.(((((((((..(((((.....------------......))))))))))))))...))).(((.....)))))).)).... ( -30.40) >DroSim_CAF1 2821 81 + 1 UGGAGCCCGCAGGUCCAGGAGCUGGAGGUUCCG------------GUUUGUCCUUCUUCCUGGGCGAAUCCUUGCUCAUUGCAGCUGCCGGAA .....((.(((((((((((((..(((((.....------------......))))))))))))))......((((.....)))))))).)).. ( -30.60) >DroEre_CAF1 2756 93 + 1 UGGAGCCCGGAGGUCCAGGAGCUGUAGGUUCCGGCUGCGUGGAGGGUUUGUCCUUCUUCCUGGGCGAGUCCUUGCUCAUUGCAGCGGCUGGAA ((.(((((((....)).)).))).))..((((((((((...((((..((((((........))))))..))))((.....)).)))))))))) ( -43.10) >consensus UGGAGCCCGGAGGUCCAGGAGCUGGAGGUUCCG____________GUUUGUCCUUCUUCCUGGGCGAAUCCUUGCUCAUUGCAGCUGCCGGAA ......((((..((((((((...(((((.......................))))).))))))))......((((.....))))...)))).. (-24.46 = -25.03 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:59 2006