Locus 6153

Sequence ID 3L_DroMel_CAF1
Location 16,295,487 – 16,295,600
Length 113
Max. P 0.616348
window9885

overview

Window 5

Location 16,295,487 – 16,295,600
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.49
Mean single sequence MFE -33.17
Consensus MFE -20.11
Energy contribution -19.82
Covariance contribution -0.30
Combinations/Pair 1.50
Mean z-score -1.34
Structure conservation index 0.61
SVM decision value 0.17
SVM RNA-class probability 0.616348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16295487 113 - 23771897
UAAUCGUAGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGGCCAGGUCAAAGGGACAGUAAAAGAUGCAGUACCUUU--UUGAGUGGAAACAAAG-----C
...(((((..(.((((....)))))..)))))..((((...((((((....)))))).))))...((((((((((.(((.....))).)).)).))--)))).((....))...-----. ( -36.90)
>DroSec_CAF1 7760 113 - 1
UAAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGUGCCAGGUCAAAAGGACAGUAAAAGAUGCAGUACCUGU--UUGAGUGGAAACAAAG-----C
...((((..(((((.(.((((((((.((((.....))....)).)))))))).)))))).(((..((((((((((.(((.....))).)).))).)--)))).)))..))))..-----. ( -33.00)
>DroSim_CAF1 7903 113 - 1
UUAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCAUGGCGUGUGCCAGGUCAAAAGGACAGUAAAAGAUGCAGUACCUGU--UUGAGUGGAAACAAAG-----C
(((((((((((.(((((.(((((...........)))))...)))))))).((((....)))).........)))))))).....((((...))))--.....((....))...-----. ( -31.90)
>DroEre_CAF1 9117 117 - 1
UUAUUGUGGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGCCCAGGUCGAAGGGACAGUAGAAGAUGCAGUACCUAC--UUGAUUGGAAAUAAAUCUAAG-
...(((((..(.((((....)))))..)))))..(((((...(((((....))))))))))(((((...(((.((.(((.....))).)).)))))--))).(((((......))))).- ( -34.20)
>DroWil_CAF1 979 110 - 1
UAAUGGCCGUCAUAGUGGCAGCUAGGACACGAAAUGUAACUGUACGGGCCACUGCAUGACCCAAAUCCAAGGGACAGAAGAAGAUGAUGUACCUGU--CACA---AGAUGAGAU-----U
...(((((((.(((((.(((....(....)....))).))))))).)))))((...((.(((........))).))..))....((((......))--))..---.........-----. ( -23.80)
>DroAna_CAF1 9972 112 - 1
UAAUGGUGGCCAUGGCGGUGGCCACAAGACGAAAUGACAUGGUAGAGGCCACCGUAUGGCCCAGGUCGAAGGGACAGAAAAAGAUUAUGUACCUGUGCUUGGGUAAGAAAUA--------
..(((((((((.((((....))))((........))..........)))))))))...((((((((...(((.(((...........))).)))..))))))))........-------- ( -39.20)
>consensus
UAAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGCCCAGGUCAAAGGGACAGUAAAAGAUGCAGUACCUGU__UUGAGUGGAAACAAAG_____C
.........((((.((.((((((((.((((.....))....)).)))))))).))))))......((((.(((((.(((.....))).)).)))....)))).................. (-20.11 = -19.82 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:27 2006