Locus 6138

Sequence ID 3L_DroMel_CAF1
Location 16,255,312 – 16,255,406
Length 94
Max. P 0.771156
window9860

overview

Window 0

Location 16,255,312 – 16,255,406
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.70
Mean single sequence MFE -20.44
Consensus MFE -19.47
Energy contribution -19.42
Covariance contribution -0.05
Combinations/Pair 1.18
Mean z-score -1.07
Structure conservation index 0.95
SVM decision value 0.53
SVM RNA-class probability 0.771156
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16255312 94 - 23771897
AAUGUUGUUAUGUUUCGUAUUAUACGCGACUGGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA
...((((((((((((((..((...((((..(((.....)))))))...))..))))))))))))))....(((((..(((....)))..))))) ( -22.70)
>DroSec_CAF1 6755 94 - 1
AAUGUUGUUAUGCUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA
...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -24.92)
>DroSim_CAF1 5207 94 - 1
AAUGUUGUUAUGCUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA
...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -24.92)
>DroEre_CAF1 6657 94 - 1
AAUGUUGUUAUGUUUUGUAUUAUACGCGGCUCGUGAAUUUAUGCGAAGAACGCGAGGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA
...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -21.12)
>DroYak_CAF1 8566 94 - 1
AAUGUUGUUAUGUUUUGUAUUAUACGCGACUCGUGAAAUUAUACGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCUAUAA
...((((((((((((((((...)))(((..(((((......)))))....))))))))))))))))....(((((..(((....)))..))))) ( -17.90)
>DroAna_CAF1 5318 93 - 1
AAUGUUGUUAUGUUUUGUAUUAUCCGCGACUCA-AAAUUUAUGCGAAGAACGCGCAGCUUAUCGAUUUAAUUAUGCUUAUACUGAAGCCCAUAA
...(((((..((..((((.......))))..))-........(((.....))))))))................((((......))))...... ( -11.10)
>consensus
AAUGUUGUUAUGUUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA
...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) (-19.47 = -19.42 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:03 2006