Locus 6110

Sequence ID 3L_DroMel_CAF1
Location 16,207,732 – 16,207,851
Length 119
Max. P 0.962355
window9814

overview

Window 4

Location 16,207,732 – 16,207,851
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -29.40
Consensus MFE -25.42
Energy contribution -25.82
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.87
Structure conservation index 0.86
SVM decision value 1.54
SVM RNA-class probability 0.962355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16207732 119 - 23771897
AUUUGGCCAA-AACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA
(((((.(((.-...((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90)
>DroSec_CAF1 26567 120 - 1
AUUUGGCCAAAAACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA
(((((.(((.....((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90)
>DroSim_CAF1 28458 120 - 1
AUUUGGCCAAAAACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA
(((((.(((.....((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90)
>DroEre_CAF1 25910 119 - 1
AUUUGGCCAA-AAUGCUCGAAAGUAGGCAACGAAAACGGGCCAAAGCGAACGACAAAUGUUUAUGGAGCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUGUGACAAAUGAGCGAAUGA
.(((((((..-..(((((....)..)))).((....)))))))))((......(((.(((((...))))).)))...((((.(.(....)..........).))))......))...... ( -26.00)
>DroYak_CAF1 62905 119 - 1
AUUUGGCAAA-AAUGCUCGAAAGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA
(((((.(...-..(((((....)..)))).....(((.((((...(((((((.....))))))).)))).)))....((((((.(....)..........)))))).....).))))).. ( -28.30)
>consensus
AUUUGGCCAA_AACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA
.............((((((......(....)...(((.((((...(((((((.....))))))).)))).)))....((((((.(....)..........))))))...))))))..... (-25.42 = -25.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:16 2006