| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,205,513 – 16,205,610 |
| Length | 97 |
| Max. P | 0.618428 |
| Location | 16,205,513 – 16,205,610 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.35 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16205513 97 - 23771897 CCCCCCAU-CGGCGGUAAU----AACUCGUCUUCACACCUCUCAGGCUGAACUUUAACCCUGGCGGGAAAGAAAA------------CAUUAAAUAACCC------GCCAAUGUCCGCCU ........-.(((((....----........((((..((.....)).)))).........(((((((........------------..........)))------))))....))))). ( -24.07) >DroSec_CAF1 24344 109 - 1 CCCCCCAU-CGGCGGUAAU----AACUCGUCUUCACACGUCUCAGACUGAACUUUAACCCUGGCGUGAUAGAAAACAGUAAUAAAAACAUUAAAUAACCC------GCCAGUGUCCGCCU ........-.(((((....----.....((((...........)))).........((.(((((((........)).((.......))............------))))).))))))). ( -20.30) >DroSim_CAF1 26235 109 - 1 CCCCCCAU-CGACGGUAAU----AACUCGUCUUCACACCUCUCAGACUGAACUUUAACCCUGGCGGGAAAGAAAACAUUAAUAAAAACAUUAAAUUACCA------GCCAGUGUCCGCCU ........-.((((((...----...((((((...........)))).))......)))(((((.((...(....).(((((......)))))....)).------))))).)))..... ( -15.30) >DroEre_CAF1 23856 99 - 1 --CCCCAU-CGGCGGUAAU----AACUCGUCUUCACACC--UCAGGCUGAACUGGAGUCCUGGCGGGAA---AAACCUUAAUAA---------AAUCCCCAUUGCAGCCAGUGUCCGCCU --......-.(((((....----..((((((.....((.--.(((......)))..))...))))))..---............---------......(((((....))))).))))). ( -25.40) >DroYak_CAF1 60701 99 - 1 --CCCCAUUCGGCGGUAAUAAGUAACUCGUCUUCACACC--UCAGACUGAACUUUAACCCUGGCGGGAAA--AAACCUUAAUAA---------AUAACCC------GCCAGUGUCCGCCU --........(((((....((((...((((((.......--..)))).))))))..((.((((((((...--............---------....)))------))))).))))))). ( -27.61) >consensus CCCCCCAU_CGGCGGUAAU____AACUCGUCUUCACACCUCUCAGACUGAACUUUAACCCUGGCGGGAAAGAAAACAUUAAUAA___CAUUAAAUAACCC______GCCAGUGUCCGCCU ..........(((((.............((((...........)))).........((.((((((((..............................)))......))))).))))))). (-14.63 = -14.87 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:12 2006