Locus 6102

Sequence ID 3L_DroMel_CAF1
Location 16,200,127 – 16,200,247
Length 120
Max. P 0.974443
window9802

overview

Window 2

Location 16,200,127 – 16,200,247
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -35.50
Consensus MFE -30.80
Energy contribution -31.80
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.87
SVM decision value 1.73
SVM RNA-class probability 0.974443
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16200127 120 - 23771897
CAAAUCGGCACUACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAAUGUCUCGAGAUCAAACCAUCGACGUAAACUUCCUGUGUG
.......((((.....((((....)))).(((((((((........(((((((((((....)))).)))))))........))))))))).........................)))). ( -30.69)
>DroSec_CAF1 19075 120 - 1
CAAAUUGGCACCACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAAGCCAUCGACGUAAACUUCCUGUGUC
.....((((.......((((....)))).((((((((((((.....(((((((((((....)))).))))))).....)))))))))))).....))))..((((((.......)))))) ( -39.40)
>DroSim_CAF1 20921 120 - 1
CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAACCCAUCGACGUAAACUUCCUGUGUG
.......(((((....((((....)))).((((((((((((.....(((((((((((....)))).))))))).....))))))))))))........................))))). ( -37.70)
>DroEre_CAF1 18523 120 - 1
CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUGUCAAAGUGCCUCGAGAUCAGCCCAUCUACGUAAACUUCCUGCGUG
......(((.......((((....)))).((((((.(((((.(((.(((((((((((....)))).))))))))))..))))).))))))....)))....((((((.......)))))) ( -36.80)
>DroYak_CAF1 55393 120 - 1
CAAAUCGGCACAACUCGGGCUCCAGCACCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUGUCAAAGUGUCUAGAGAUCAAUCCAUCUACGUAAACUUCCUGCGUA
......((.....(((((((....)).))....((((((((.(((.(((((((((((....)))).))))))))))..)))))))).)))......))...((((((.......)))))) ( -32.90)
>consensus
CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAACCCAUCGACGUAAACUUCCUGUGUG
.......((((.....((((....)).))((((((((((((.....(((((((((((....)))).))))))).....)))))))))))).........................)))). (-30.80 = -31.80 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:04 2006