| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,155,023 – 16,155,141 |
| Length | 118 |
| Max. P | 0.784362 |
| Location | 16,155,023 – 16,155,141 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -15.85 |
| Energy contribution | -17.35 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16155023 118 - 23771897 UGCAGACGGGGAUACACCUGAAGAAAUCGCAGUUACCUGCCACAGGUAUUGGUUAAAUUCAAAGA-UAAG-UUAAAUAAGCUUAAUAUCUAAGUUCUUUUACCAGCGAAACCUUGCCUUU .((((.((((......))))......((((...((((((...)))))).((((.(((..(..(((-((((-((.....))))...)))))..)...))).))))))))....)))).... ( -26.40) >DroSec_CAF1 12365 120 - 1 UGCAGACGGGGAUACACCUGAAGAAAUCGCAGUUACCUGCCACAGGUAUUGUUUCAAUUUAGAAAAAAAGCUUAAAUAAGCUUAAAAUCCAUGCUCUUUUACCAGGAAAACCUUGUCCAU ....(((((((.....((((..((((..(((..((((((...))))))...((((......))))..((((((....))))))........)))..))))..))))....)))))))... ( -29.30) >DroSim_CAF1 13738 113 - 1 UGCAGACGGUGAUACACCUGAAGAAAUCGCAGUUACCUGCCACAGGUAUUGGUUCAAUUCAGAAA-AAAGCUUAAAUAAGCUUAAAAUCCAAGCUCUUUCACCAGGGAAACCUA------ .......(((((.....(((((..(((((....((((((...)))))).)))))...)))))...-.((((((....))))))...............)))))(((....))).------ ( -31.00) >DroEre_CAF1 12060 115 - 1 UGCAGACGGGG-UACACCUGAAAAAACCGCAGCUACCUGCCGCAGGUAUUG-UAAAAUUCAAAGA-AAAGCCAAAAUAGGCUUUACAAUUA--UUCCUCAACCGCGGAAAUCUUGUCUUU ...((((((((-(.....((((......((((.((((((...)))))))))-)....))))..(.-((((((......)))))).).....--((((.(....).))))))))))))).. ( -28.60) >consensus UGCAGACGGGGAUACACCUGAAGAAAUCGCAGUUACCUGCCACAGGUAUUGGUUAAAUUCAAAAA_AAAGCUUAAAUAAGCUUAAAAUCCAAGCUCUUUUACCAGGGAAACCUUGUCUUU ....(((((((.....((((.........(((.((((((...)))))))))................(((((......)))))...................))))....)))))))... (-15.85 = -17.35 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:13 2006