Locus 606

Sequence ID 3L_DroMel_CAF1
Location 1,763,207 – 1,763,327
Length 120
Max. P 0.755089
window925

overview

Window 5

Location 1,763,207 – 1,763,327
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.44
Mean single sequence MFE -37.00
Consensus MFE -32.83
Energy contribution -32.53
Covariance contribution -0.30
Combinations/Pair 1.24
Mean z-score -1.60
Structure conservation index 0.89
SVM decision value 0.49
SVM RNA-class probability 0.755089
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1763207 120 - 23771897
GAUCAGCUUGACCAGCUGUCUAUGCGCAUGCAGCACAACUUAGAGCAACAGAUCCAGGCACGCAACCACUCGGGCGUCUCCGAGGACUCACUCAAGGAGUUCUCGAUGAUGUUCAAGCAC
.....((((((...(((((((.(((....)))((.(......).)).........))))).))..((....))(((((..(((((((((.(....))))))))))..))))))))))).. ( -38.70)
>DroVir_CAF1 482 120 - 1
GAUCAGCUGGACCAGCUGUCGAUGCGCAUGCAACACAAUCUGGAGCAACAGAUACAGGCGCGCAACCAUUCGGGCGUCUCGGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAC
((.((((((...))))))))..(((((..((......(((((......)))))....))))))).......((((((((((.(((((((.......)))))))))).)))))))...... ( -41.10)
>DroGri_CAF1 485 120 - 1
GAUCAGCUGGAUCAGCUAUCAAUGCGUAUGCAACACAAUCUGGAGCAACAGAUACAGGCACGCAAUCAUUCGGGCGUUUCCGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAU
(((.(((((...)))))))).(((((..(((......(((((......)))))....)))..)........(((((((..(((((((((.......)))))))))..)))))))..)))) ( -40.20)
>DroWil_CAF1 491 120 - 1
GAUCAACUGGAUCAAUUGUCGAUGCGUAUGCAGCAUAAUUUGGAACAACAGAUACAGGCACGCAAUCAUUCGGGCGUCUCUGAGGAUUCGCUUAAGGAAUUCUCAAUGAUGUUCAAGCAC
((((.....))))...(((.(((((((..((......(((((......)))))....)))))).)))....(((((((..(((((((((.......)))))))))..)))))))..))). ( -34.60)
>DroMoj_CAF1 489 120 - 1
GAUCAAUUGGAUCAACUAUCGAUGCGUAUGCAACAUAAUUUGGAGCAACAGAUACAGGCACGCAAUCAUUCGGGCGUCUCAGAGGAUUCGCUCAAGGAAUUCUCCAUGAUGUUCAAGCAC
((((.....)))).......(((((((..((......(((((......)))))....)))))).)))....(((((((...((((((((.......))))))))...)))))))...... ( -32.10)
>DroAna_CAF1 482 120 - 1
GACCAGCUGGACCAGCUCUCCAUGCGCAUGCAACACAACUUGGAACAGCAGAUCCAGGCACGCAACCACUCCGGCGUCUCCGAGGACUCACUGAAGGAGUUCUCGAUGAUGUUCAAGCAC
((.(.((((((...((.......))((.(((........(((((.(....).)))))))).))......))))))(((..(((((((((.(....))))))))))..)))).))...... ( -35.30)
>consensus
GAUCAGCUGGACCAGCUGUCGAUGCGCAUGCAACACAAUUUGGAGCAACAGAUACAGGCACGCAACCAUUCGGGCGUCUCCGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAC
(((.(((((...))))))))..(((((.(((......(((((......)))))....))).))........(((((((..(((((((((.......)))))))))..)))))))..))). (-32.83 = -32.53 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:28 2006