Locus 605

Sequence ID 3L_DroMel_CAF1
Location 1,761,453 – 1,761,573
Length 120
Max. P 0.924964
window924

overview

Window 4

Location 1,761,453 – 1,761,573
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.50
Mean single sequence MFE -49.05
Consensus MFE -29.15
Energy contribution -32.52
Covariance contribution 3.37
Combinations/Pair 1.22
Mean z-score -2.22
Structure conservation index 0.59
SVM decision value 1.17
SVM RNA-class probability 0.924964
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1761453 120 + 23771897
UGGAUGACACGCUCUACCUUUUGGUACAGCAGAAGCUGGGCCAGCAGGAGCACCUCAUUCUACCGCAGGGAAAGCGUGAGGAGGGAGAGUCCAUGCGUCAGACUGCAGAAAGAGUGCUCC
..........(((.((((....)))).)))....((((...)))).(((((((.((.((((...((((.....(((((.(((.......))).)))))....)))))))).))))))))) ( -40.90)
>DroVir_CAF1 5385 120 + 1
UGGAGGACACGCUCUAUCUGGUAGUUAAGCAAAAGCUCGGCCAACAGGAGCAUUUGGUGCUGCCGCAGGGUCUCCGCCAGGAGGGCGAAUCCAUGCGACAAACAGCGGAGCGUGUGCUUC
.((((.(((((((((..((((((((..(.((((.((((.........)))).)))).))))))((((((((...((((.....)))).)))).)))).....))).))))))))).)))) ( -50.50)
>DroPse_CAF1 5778 120 + 1
UGGAGGACACGCUCUAUUUGCUGGUGCAACAAAAGCUCGGCCAGCAGCAGCACAUGAUCCUGCCGCAGGGAAAGCGCCAAGACGGUGAGUCCAUGCGCCAGACGGCGGAGCGUGUGCUAC
...((.(((((((((.....((((((((.......((((((.((...((.....))...)))))).))(((...((((.....))))..))).)))))))).....))))))))).)).. ( -51.50)
>DroMoj_CAF1 5229 120 + 1
UAGAGGACACGCUUUAUUUGGUUGUCAAGCAAAAGCUUGGGGAGCAGGAGCAUUUCGUGCUACCGCAGGGACUGCGCAAGGAUGGCGAAUCCAUGCGACAGACGGCGGAACGUGUGCUGA
...((.(((((.....((((.((.((((((....)))))).)).))))(((((...))))).((((..(..(((((((.((((.....)))).)))).))).).))))..))))).)).. ( -46.40)
>DroAna_CAF1 5043 120 + 1
UAGAGGACACCCUGUACCUGCUCGUUCAGCAGAAGCUGGGUCAGCAGCAGCACCUAAUCCUGCCGCAGGGCAAGCGGCUGGAAGGCGAAUCCAUGAGACAGACCGCGGAGCGAGUCCUCC
..((((((...((((..(((((.(..((((....))))..).)))))...(.(((..(((.(((((.......))))).)))))).)..........))))..(((...))).)))))). ( -48.00)
>DroPer_CAF1 5764 120 + 1
UGGAGGACACGCUCUAUUUGCUGGUGCAACAAAAGCUCGGCCAGGAGCAGCACAUGAUCCUGCCGCAGGGAAAGCGCCAAGACGGUGAGUCCAUGCGCCAGACGGCGGAGCGUGUGCUAC
...((.(((((((((.....((((((((.......((((((.((((.((.....)).)))))))).))(((...((((.....))))..))).)))))))).....))))))))).)).. ( -57.00)
>consensus
UGGAGGACACGCUCUAUCUGCUGGUGCAGCAAAAGCUCGGCCAGCAGCAGCACAUGAUCCUGCCGCAGGGAAAGCGCCAGGACGGCGAAUCCAUGCGACAGACGGCGGAGCGUGUGCUAC
...((.(((((((((..((((((((..(((....)))..))))))))............(((.((((.(((...((((.....))))..))).)))).))).....))))))))).)).. (-29.15 = -32.52 +   3.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:27 2006