Locus 6036

Sequence ID 3L_DroMel_CAF1
Location 16,093,143 – 16,093,263
Length 120
Max. P 0.514777
window9664

overview

Window 4

Location 16,093,143 – 16,093,263
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -35.47
Consensus MFE -29.74
Energy contribution -30.97
Covariance contribution 1.23
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.84
SVM decision value -0.04
SVM RNA-class probability 0.514777
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16093143 120 - 23771897
GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACCAAAUUUGAAUCGGGUAAAAUUGAUUUAGGGACUCGUGCAAUCGC
((((.((..((((((((((.((((......(((...(((((((..((((..(...((((.....)))).)..))))....))))))).)))....))))))))))))))..))))))... ( -35.80)
>DroSim_CAF1 1 120 - 1
GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACGAAAUUUGAAUCGGUUAAAAUUGGCUUAGGGACUCGGGCAAUAGC
((((...(((.((((((((.((((....(((((...((((((((((.....(...((((.....)))).)....)))...))))))))))))...)))))))))))))))...))))... ( -35.10)
>DroYak_CAF1 1 119 - 1
GUUGACAGAGGUCCCUGGGGUCGAAAAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUAAUCGGGCAACCAAAUAUGAAUCGGUUACAAUUGAUUUAGGGUCUCAGGCAAUGG-
((((...((((.(((((((.((((....(((((...((((((...(((((((.(......))))))))((....)).....)))))))))))...)))))))))))))))...))))..- ( -35.50)
>consensus
GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACCAAAUUUGAAUCGGUUAAAAUUGAUUUAGGGACUCGGGCAAUAGC
((((...(((.((((((((.((((....(((((...(((((((..((((..(...((((.....)))).)..))))....))))))))))))...)))))))))))))))...))))... (-29.74 = -30.97 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:34 2006