Locus 6021

Sequence ID 3L_DroMel_CAF1
Location 16,058,824 – 16,058,933
Length 109
Max. P 0.566665
window9634

overview

Window 4

Location 16,058,824 – 16,058,933
Length 109
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.69
Mean single sequence MFE -27.27
Consensus MFE -18.35
Energy contribution -18.43
Covariance contribution 0.08
Combinations/Pair 1.33
Mean z-score -1.06
Structure conservation index 0.67
SVM decision value 0.07
SVM RNA-class probability 0.566665
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16058824 109 + 23771897
AUUCCGUGCUCUUUUUCGUGGAGUAUAACAAGCCCUGGAUCUUUUUCGAACUUAUUCCUUUUGUUUUCCUCGGAAUUAUGGGGGUAAAUCU--GAA--------CUAAUUUUGAAGCUC
.....(((((((.......)))))))....(((..(..(..(..((((.(.((((((((......(((....)))....)))))))).).)--)))--------..)..)..)..))). ( -18.40)
>DroPse_CAF1 3607 104 + 1
AUUCCGUGCUCUUCUUCGUGGAGUACAACAAGCCGUGGAUCUUCUUCGAACUUAUUCCCUUUGUGUUUCUGGGAAUCAUGGGAGUAGGUCA--AUU--------CU-----GGCUGCCA
.....(((((((.......)))))))....(((((..(((((.((((.(....((((((...........))))))..).)))).))))).--...--------.)-----)))).... ( -30.80)
>DroGri_CAF1 8847 115 + 1
AUUCCGUGCUUUUCUUUGUCGAGUACAACAAGCCUUGGAUAUUCUUUGAACUAAUUCCCUUUGUAUUUCUGGGCAUUAUGGGCGUGAGUAA--CUAGGCGGAGUAUUAUCGG--AUUGC
(((((((((((.........)))))).....((((.((.(((((..((..(((((.(((...........))).)))).)..)).))))).--)))))))))))........--..... ( -28.50)
>DroSec_CAF1 551 109 + 1
AUUCCGUGCUCUUUUUCGUGGAGUACAACAAGCCGUGGAUAUUUUUUGAACUUAUUCCUUUUGUUUUCCUCGGAAUUAUGGGGGUAAGUUC--AGU--------GUAAUUUGAAAGCUC
.....(((((((.......)))))))....(((..(.((......((((((((((((((......(((....)))....))))))))))))--)).--------.....)).)..))). ( -31.30)
>DroAna_CAF1 813 107 + 1
AUUCCGUGCUUUUCUUCGUGGAGUACAACAAGCCCUGGAUAUUCUUUGAACUUAUUCCGUUUGUGUUCUUGGGAAUCAUGGGGGUAAGUUUUAAAU--------GUAACCUA----UCC
.....(((((((.......)))))))..........((.(((.....(((((((((((...((.((((....))))))..))))))))))).....--------))).))..----... ( -23.90)
>DroPer_CAF1 3614 104 + 1
AUUCAGUGCUCUUCUUCGUGGAGUACAACAAGCCGUGGAUCUUCUUCGAACUUAUUCCCUUUGUGUUUCUGGGAAUCAUGGGAGUAGGUCA--AUU--------CU-----GGCUGCCA
.....(((((((.......)))))))....(((((..(((((.((((.(....((((((...........))))))..).)))).))))).--...--------.)-----)))).... ( -30.70)
>consensus
AUUCCGUGCUCUUCUUCGUGGAGUACAACAAGCCGUGGAUAUUCUUCGAACUUAUUCCCUUUGUGUUCCUGGGAAUCAUGGGGGUAAGUCA__AUU________CUAAU_UGG_AGCCC
.....(((((((.......))))))).......................((((((((((.....((((....))))...)))))))))).............................. (-18.35 = -18.43 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:03 2006