Locus 6014

Sequence ID 3L_DroMel_CAF1
Location 16,051,598 – 16,051,702
Length 104
Max. P 0.604450
window9620

overview

Window 0

Location 16,051,598 – 16,051,702
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.41
Mean single sequence MFE -37.13
Consensus MFE -22.93
Energy contribution -23.43
Covariance contribution 0.50
Combinations/Pair 1.23
Mean z-score -1.36
Structure conservation index 0.62
SVM decision value 0.14
SVM RNA-class probability 0.604450
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16051598 104 - 23771897
UAUCCGGGCCAGAGCAGCGGCGAGGUGAUGUGGAGCCACACGACGCAGUCGUUCUGUGUCGGCUACAUGGCAACCAACCAGAGGGUGCCAAAGGUUCGUACACC----------------
...((..(((........)))..))...(((((((((...((((((((.....))))))))......(((((.((.......)).)))))..))))).))))..---------------- ( -38.70)
>DroPse_CAF1 22545 120 - 1
UAUCCGAAGCAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCGUUUUGCGUUGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUUGUAUGCCAAUGCGAUGCUAUGCC
.......((((..(((..((((..(((...((..(((((.((((((((.....)))))))).....)))))..)).)))......))))...(((......)))..)))..))))..... ( -41.10)
>DroWil_CAF1 2 92 - 1
UAUCCGAAACAGGGCAGCGGCGAGGUGAUGUGGAGCCAUACAACGCAAUCAUUUUGCGUCGGAUACAUGGCGACAACGCAGAAAGUGCCAAA----------------------------
............((((((((((((((((((((...........))).))))))))))((((.........))))..)))......))))...---------------------------- ( -26.50)
>DroMoj_CAF1 4323 109 - 1
UAUCCCAAACAGAGCUGUGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCAUUCUGUGUUGGGUACAUGGCAACCACGCAAAAAGUGCCAAAGGUUGGUGCAA---AGCCAU--------
................(((((....((.(((((.(((((.(((((((.......))))))).....)))))..)))))))....(..(((.....)))..)..---.)))))-------- ( -33.70)
>DroAna_CAF1 2179 100 - 1
UAUCCGAGCCAGAGCAGCGGGGAGGUGAUGUGGAGCCACACGACGCAGUCAUUUUGUGUCGGCUACAUGGCCACCACCCAGAAGGUGCCAAAGGUUCGA----C----------------
....((((((...(((.(.(((.((((.((((.((((....(((((((.....))))))))))).))))..)))).)))....).)))....)))))).----.---------------- ( -41.70)
>DroPer_CAF1 26684 120 - 1
UAUCCGAAGCAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCGUUUUGCGUUGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUUGUAUGCCAAUGCGAUGCUAUGCC
.......((((..(((..((((..(((...((..(((((.((((((((.....)))))))).....)))))..)).)))......))))...(((......)))..)))..))))..... ( -41.10)
>consensus
UAUCCGAAACAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCAUUUUGCGUCGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUCGUA__CC________________
..................((((...(..((((..(((((.((((((((.....)))))))).....))))).....))))..)..))))............................... (-22.93 = -23.43 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:49 2006