Locus 6010

Sequence ID 3L_DroMel_CAF1
Location 16,043,366 – 16,043,463
Length 97
Max. P 0.982642
window9611

overview

Window 1

Location 16,043,366 – 16,043,463
Length 97
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 92.76
Mean single sequence MFE -19.45
Consensus MFE -18.29
Energy contribution -17.48
Covariance contribution -0.81
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.94
SVM decision value 1.92
SVM RNA-class probability 0.982642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16043366 97 - 23771897
ACACAGAAGACGGCUGGUCAA----CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUUAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC
.(((....((((.((((....----)))).))))((.((((((.(((..........)))..((((....)))).......)))))).)))))........ ( -18.20)
>DroSec_CAF1 13786 97 - 1
ACACAGAAGACGGCUAGUCAA----CUAGGUGUUUUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC
.(((..((((((.((((....----)))).)))))).((((((.(((..........))).)))))).......................)))........ ( -21.40)
>DroSim_CAF1 11299 97 - 1
ACACAGAAGACGGCUAGUCAA----CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC
.(((....((((.((((....----)))).))))...((((((.(((..........))).)))))).......................)))........ ( -19.20)
>DroYak_CAF1 36226 100 - 1
ACACAGAAGACAGCUAGUCAACUAACUAGGUGUUCUAUAUGAUGGCCAAAAGGGAAAGGCAAUUAUAAAAGUAA-GAUUAAUAUAUAAGGGUGAUAGAAAC
.(((....((((.(((((......))))).))))...((((((.(((..........))).)))))).......-...............)))........ ( -19.00)
>consensus
ACACAGAAGACGGCUAGUCAA____CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC
.(((....((((.((((........)))).))))...((((((.(((..........))).)))))).......................)))........ (-18.29 = -17.48 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:39 2006