Locus 6007

Sequence ID 3L_DroMel_CAF1
Location 16,038,067 – 16,038,174
Length 107
Max. P 0.736810
window9608

overview

Window 8

Location 16,038,067 – 16,038,174
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 88.94
Mean single sequence MFE -23.72
Consensus MFE -17.78
Energy contribution -19.21
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.75
SVM decision value 0.44
SVM RNA-class probability 0.736810
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16038067 107 - 23771897
GAAACUAGGAAAAUUCGUGAAAAAGCAGACAUAGAAUAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCAUUAAGUGCGCGACAGGAGACAGA
..............((((......(((((((.(((...((....)).(((......)))))).)))))))...........((((...))))))))..(....)... ( -22.90)
>DroSec_CAF1 8610 107 - 1
GUAACUGGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG
....(((......(((.((((...(((((((((((...((....)).(((......)))))))))))))).))))......((((.....))))....)))..))). ( -27.60)
>DroSim_CAF1 6109 107 - 1
GUAACUGGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG
....(((......(((.((((...(((((((((((...((....)).(((......)))))))))))))).))))......((((.....))))....)))..))). ( -27.60)
>DroEre_CAF1 8741 98 - 1
GAAACUAGGAAAAUUUGAUUAAAAGCAGACAUAGGAAAG--CGAGCAUAGGAGAAACUAUUUUGGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACA-------GG
..........((((((((......((((((.........--((((.((((......))))))))))))))..)))))))).((((.....))))....-------.. ( -16.80)
>consensus
GAAACUAGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG
....(((.......((((......(((((((((((...((....)).(((......))))))))))))))...........(((.....))))))).......))). (-17.78 = -19.21 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:36 2006