Locus 6004

Sequence ID 3L_DroMel_CAF1
Location 16,025,240 – 16,025,347
Length 107
Max. P 0.681082
window9605

overview

Window 5

Location 16,025,240 – 16,025,347
Length 107
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 96.28
Mean single sequence MFE -37.77
Consensus MFE -35.08
Energy contribution -35.33
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.93
SVM decision value 0.31
SVM RNA-class probability 0.681082
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16025240 107 + 23771897
UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA
..(((((((..((...((....((((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))))..)).))..)))))))... ( -37.20)
>DroSec_CAF1 24969 107 + 1
UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA
..(((((((..((...((....((((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))))..)).))..)))))))... ( -37.20)
>DroSim_CAF1 33631 108 + 1
UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAAGGCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA
....(((((......)))))....((((.((((..((((.((((..(((.....)))))))...))))..))))..))))((((((.(((...)))...))))))... ( -37.10)
>DroEre_CAF1 28024 103 + 1
UUGAUGGUUAAGAAA-GC---GGGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA
..(((((((.(((..-.(---..(((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))).)..)))...)))))))... ( -39.60)
>consensus
UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA_GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA
..(((((((.......((....((((((.((((..((((.((((..(((.....)))))))...))))..))))...(....)))))))..)).....)))))))... (-35.08 = -35.33 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:33 2006