| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 31,221 – 31,322 |
| Length | 101 |
| Max. P | 0.642174 |
| Location | 31,221 – 31,322 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.18 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -20.04 |
| Energy contribution | -21.27 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 31221 101 - 23771897 AGGCAGGAUAAGUGCAU--UUUGUCUGGUCUGCAUUUAUGUGUGAUGAUGGAAGAUGGAGGGCAAACAUGGAUUUUCUG-AGGUCAUCGUUAGCAUC--GCUAACA ((((.(((((((.....--))))))).))))((((....))))(((((((((((((....(.....)....))))))).-..))))))((((((...--)))))). ( -27.10) >DroSec_CAF1 20370 106 - 1 UAGCAGGAUAAGUGCAGGAUAAGUCUGGUCUGCAUUUAUAUGUGAAGAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ..(((..((((((((((..((....))..)))))))))).))).............((..(((...((((((((......)))))))))))..))........... ( -27.90) >DroSim_CAF1 21964 104 - 1 UAGUAGGAUAAGUGCAU--UUUGUCUGGUCUGCAUUUAUAUGUGAAAAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ..((.......((((..--(((((((.((((.(((((........)))))..))))...)))))))((((((((......))))))))....)))).......)). ( -27.44) >consensus UAGCAGGAUAAGUGCAU__UUUGUCUGGUCUGCAUUUAUAUGUGAAGAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ...........((((....(((((((.((((.(((((........)))))..))))...)))))))((((((((......))))))))....)))).......... (-20.04 = -21.27 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:44 2006