| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,010,999 – 16,011,094 |
| Length | 95 |
| Max. P | 0.884350 |
| Location | 16,010,999 – 16,011,094 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 74.82 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16010999 95 + 23771897 ACAAUGACCGCCCCUUAUUUUUC----UCCAUCCACAUCAUCCAAUCCAAUUGAGUAUGUUGUUUUUAAAGCAGCAUUGAUGAUCAAGGGGCAAGUGCG-- .........(((((((.......----.........((((((((((...))))...((((((((.....)))))))).)))))).))))))).......-- ( -21.43) >DroSec_CAF1 11133 91 + 1 ACAAUAACCGCCCCUUAUUCUUC----UCCAGCCA-AUCAU---UUCCAAUUGAGAAUGUUGUUUUUAAAACAGCAUUGUUGAUCAAGGGACAAGUGCG-- ........(((..(((.(((((.----..((((..-.(((.---.......))).(((((((((.....)))))))))))))....))))).))).)))-- ( -17.00) >DroSim_CAF1 18925 91 + 1 ACAAUAACCGCCCCUUAUUCUUC----UCCAGCCA-AUCAU---UUCCAAUUGAGUAUGUUGUUUUUAAAACAGCAUUGUUGAUCAAGGGGCAAGUGCG-- .........(((((((..((...----....((((-((...---.....)))).))((((((((.....))))))))....))..))))))).......-- ( -22.80) >DroEre_CAF1 13322 92 + 1 ACAAUAACCGCCCCUUAUUCUUC----UACAUCCACAUUAU---GCCCAAUUGAGAAUGUUGUUUUUAAAACAGCAUUGUUAAUCGAGGGCGAAGCGCG-- ........(((((..........----..(((.......))---)..(.(((((.(((((((((.....))))))))).))))).).))))).......-- ( -20.50) >DroAna_CAF1 11655 86 + 1 CC------CCCUCCCCAUCACCCUCCCUCCCGACC-AUCAC---ACCCAAUUGAGAAUGUUGUUUUUAAAACAGCAUUUUC-----AGAGUAUAGUAUAGU ..------...........................-.....---......((((((((((((((.....))))))))))))-----))............. ( -14.70) >consensus ACAAUAACCGCCCCUUAUUCUUC____UCCAGCCA_AUCAU___AUCCAAUUGAGAAUGUUGUUUUUAAAACAGCAUUGUUGAUCAAGGGGCAAGUGCG__ ......................................(((...((((.(((((.(((((((((.....))))))))).)))))...))))...))).... (-11.10 = -11.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:15 2006