Locus 5964

Sequence ID 3L_DroMel_CAF1
Location 15,978,178 – 15,978,298
Length 120
Max. P 0.994523
window9523

overview

Window 3

Location 15,978,178 – 15,978,298
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.67
Mean single sequence MFE -45.88
Consensus MFE -46.04
Energy contribution -45.88
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 1.00
SVM decision value 2.49
SVM RNA-class probability 0.994523
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15978178 120 - 23771897
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00)
>DroSec_CAF1 7333 120 - 1
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00)
>DroSim_CAF1 8010 120 - 1
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00)
>DroEre_CAF1 7662 120 - 1
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00)
>DroYak_CAF1 7576 120 - 1
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGGCUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -45.40)
>consensus
AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG
....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... (-46.04 = -45.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:15 2006