| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,960,591 – 15,960,686 |
| Length | 95 |
| Max. P | 0.766028 |
| Location | 15,960,591 – 15,960,686 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.01 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -17.24 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15960591 95 + 23771897 ------AUUAUAUAUUC---CU-------AUUUCAACUCACUUGUCUAACAGAUCGGCGACGGGAUCUGCGUAUUUGGCUAGUGAUGCUGUGAACAGAACGCACUCGUAUA ------..(((((....---..-------........(((((.(((...((((((........)))))).......))).)))))..(((....))).........))))) ( -18.20) >DroVir_CAF1 41430 100 + 1 --------UAUAUCUUAUUGAU--AUAU-GAUAUUACUUACUUGUCUAGCAGAUCCGCAACGGGAUCUGCGUAUUUGGCUAGUGAUGCUGUAAACAGAACGCACUCGUAAA --------((((((.....)))--))).-((((.........))))..((((((((......)))))))).......((.((((...(((....)))....)))).))... ( -27.70) >DroGri_CAF1 28482 104 + 1 UAUAUAGUUAUGUGUAUAUAUC-------ACUAUCACUCACUUGUCUAGCAGAUCGGCAACGGGAUCUGCGUAUUUGGCUAGUGAUGCUGUAAACAAAACGCACUCGUACA ......(((.(((.((((((((-------((((((((......))...((((((((....)..)))))))......)).)))))))).)))).))).)))........... ( -26.20) >DroYak_CAF1 70866 108 + 1 --CAUAAAUAUAAAUUA-GAGUAAAUAUAAUUUGAACUCACUUGUCUAGCAGAUCGGCGACGGGAUCUGCAUAUUUGGCUAGUGAUGCUGUAAACAGAACGCACUCGUAGA --..(((((((......-((((.((......))..)))).........(((((((........))))))))))))))((.((((...(((....)))....)))).))... ( -25.30) >DroMoj_CAF1 40107 103 + 1 UUUGU-GGUAUUUCUUAAUAAU-------AAUAAUACUCACUUAUCUAGCAGAUCGGCAACAGGAUCUGCAUAUUUGGCUAGUGAUGCUGUAAACAAAACGCACUCGUACA ...((-((((((..........-------...))))).))).......((((((((....)..))))))).......((.((((....((....)).....)))).))... ( -20.72) >DroAna_CAF1 31850 90 + 1 ------AUUAUAAAUC---------------UGAAACUCACUUGUCUAACAGAUCGGCAACUGGAUCUGCAUAUUUGGCUAGUGAUGCUGUAAACAAAACGCACUCGUACA ------..........---------------......(((((.(((...(((((((....)..)))))).......))).)))))(((.((.......)))))........ ( -15.90) >consensus ______AUUAUAUAUUA_UAAU_______AAUAAAACUCACUUGUCUAGCAGAUCGGCAACGGGAUCUGCAUAUUUGGCUAGUGAUGCUGUAAACAAAACGCACUCGUACA .....................................(((((.(((..(((((((........)))))))......))).)))))(((.((.......)))))........ (-17.24 = -17.60 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:04 2006