Locus 5924

Sequence ID 3L_DroMel_CAF1
Location 15,908,924 – 15,909,040
Length 116
Max. P 0.779686
window9460

overview

Window 0

Location 15,908,924 – 15,909,040
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.54
Mean single sequence MFE -31.02
Consensus MFE -24.58
Energy contribution -24.90
Covariance contribution 0.32
Combinations/Pair 1.13
Mean z-score -1.68
Structure conservation index 0.79
SVM decision value 0.55
SVM RNA-class probability 0.779686
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15908924 116 + 23771897
AGUUGAUAUAUUGGCUGCGGAGACCUGAGGGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUUGUUCUACUUAGUCAAA----AAAGUGGGCCACCGAACAAAAUUUAU
(((..(....)..)))((((((((((...(....)...))))).....(((........)))...))))).(((((((.((((.......----.))))((....)))))))))...... ( -33.70)
>DroSec_CAF1 8402 118 + 1
AGUUGAUAUAUUGGCUGCGGAGACCUGAGAGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUACUACUUAGUCAAAA--AAAAGUGGGCCACCGAACAAAAUUUAU
..........((((.(((((((((((............))))).....(((........)))...)))))).((((.((((((........--..))))))))))))))........... ( -29.10)
>DroSim_CAF1 10906 120 + 1
AGUUGAUAUAUUGGCUGUGGAGACCUAAGAGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUACUACUUAGUCAAAAAAAAAAGUGGGCCACCGAACAAAAUUUAU
..........((((.(((((((((((............))))).....(((........)))...)))))).((((.((((((............))))))))))))))........... ( -26.10)
>DroEre_CAF1 8445 115 + 1
AGUUGAUAUAUUAGCUGCGAAGACCUGAGGGAAACAUAAGGUCAGCACCUCCAUUGUCAGAGAUUUCCGCAUUGGCUC-ACUUAGCCGGG----AAAUUGGGCCACCGAACAAAAUGUAU
..((((((....((.(((...(((((...(....)...))))).))).))....)))))).(((((((....(((((.-....)))))))----)))))((....))............. ( -31.90)
>DroYak_CAF1 8446 116 + 1
AGUUGAUAUAUUAGCUGUGGAGACCUGAGGGAAACAUAGGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGCUCUACUUAGUCGAA----AAAGUGGGCCACCGAACAAAAUUUAU
((((((....))))))((((((((((...(....)...))))).....(((........)))...)))))..((((.((((((.......----.))))))))))............... ( -34.30)
>consensus
AGUUGAUAUAUUGGCUGCGGAGACCUGAGGGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUUCUACUUAGUCAAA____AAAGUGGGCCACCGAACAAAAUUUAU
((((((....))))))((((((((((...(....)...))))).....(((........)))...)))))..((((.((((((............))))))))))............... (-24.58 = -24.90 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006