Locus 592

Sequence ID 3L_DroMel_CAF1
Location 1,710,433 – 1,710,547
Length 114
Max. P 0.958171
window902

overview

Window 2

Location 1,710,433 – 1,710,547
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.84
Mean single sequence MFE -37.78
Consensus MFE -15.08
Energy contribution -16.64
Covariance contribution 1.56
Combinations/Pair 1.27
Mean z-score -2.42
Structure conservation index 0.40
SVM decision value 1.49
SVM RNA-class probability 0.958171
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1710433 114 - 23771897
GUAAUGGAUGAG-AAUGACUGCGGCGGUCUUAUCAUCCACCCUUAUCACUUGUAAAAUCUUGAGCAAAGUCGAGGGGUAUGCCAAAUGGUUA-UCUCUUUC----UACUUUAGGUUAUAU
....(((((((.-...(((((...)))))...)))))))............(((.(((((.(((...((..((((((((.(((....)))))-)))))).)----).))).))))).))) ( -29.00)
>DroSec_CAF1 10462 114 - 1
GGGUUGGAGGGGAAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUGGUUA-UCUCUGUC----UACUUAAAUUUAUAU
((((.(((.(((((.((((...)))))))))....)))))))..(((((((((((((((((((......)))))))))-)).))))))))..-........----............... ( -38.20)
>DroSim_CAF1 10562 115 - 1
GGGUUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUGGUUAGUCUCUGUC----UACUUAAAUUUAUCU
((((.(((..(((((((((...)))))))))....)))))))..(((((((((((((((((((......)))))))))-)).))))))))...........----............... ( -42.30)
>DroEre_CAF1 10846 118 - 1
GGGAUGGAGGGGUAAUGCCUGCGGUUCACUUAUCGCCUGGCGUUAUCACUUGUAAUCCCUUGAUAACGAUUGAAGGAC-UGCAAAGGGGUAA-UCUCUGCCAUCCCAUAUCAUCUCAUAU
(((((((((((((.(((((.(((((......)))))..)))))((((..(((((.(((.(..((....))..).))).-)))))...)))))-))))).))))))).............. ( -43.70)
>DroYak_CAF1 10485 114 - 1
GGGAUGAAGGGUGAAUGCCUGGGUUGUUCUUAUCGCCCGGCGUUAUCACUUGUAAUCUCGUGAGCAAAGUCGAGGGGU-UGCUAAGUGUUUA-UCUCUGUC----UACUUUAAGUUUUAU
((((((((.....((((((.((((.((....)).))))))))))..(((((((((((((.(((......))).)))))-))).)))))))))-))))....----............... ( -35.70)
>consensus
GGGAUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU_UGCCAAGUGGUUA_UCUCUGUC____UACUUAAAGUUAUAU
(((.(((..((..((((((...))))))))..))))))......(((((((((((((((((((......))))))))).))).))))))).............................. (-15.08 = -16.64 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:05 2006