Locus 59

Sequence ID 3L_DroMel_CAF1
Location 207,589 – 207,680
Length 91
Max. P 0.668445
window82

overview

Window 2

Location 207,589 – 207,680
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 75.73
Mean single sequence MFE -29.00
Consensus MFE -13.30
Energy contribution -13.72
Covariance contribution 0.42
Combinations/Pair 1.29
Mean z-score -1.96
Structure conservation index 0.46
SVM decision value 0.29
SVM RNA-class probability 0.668445
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 207589 91 + 23771897
GUAGAU-UUGCGAGCAGAGCUAUAAAAGGGC----GCGCAGACAACGCGCUCUACCCAGUUAAAAAGAGUGCGUUGUGUAGAACAGUCAUAAGCAG
...(((-(((((.((....((.....)).))----.)))).((((((((((((............)))))))))))).......))))........ ( -26.40)
>DroSec_CAF1 6431 91 + 1
CCAGCU-GUGCGGGCAGAGCUAUAAAAGGGC----GCGCAGGCAACGCGCUCUAUCCAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG
...(((-(((((.((....((.....)).))----.)))..((((((((((((............)))))))))))).....)))))......... ( -30.50)
>DroSim_CAF1 6406 91 + 1
CCAGCU-GUGCGGGCAGAGCUAUAAAAGGGC----GCGCAGCCAACGCGCUCUAUCCAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG
...(((-((((((((...))).........)----)))))))(((((((((((............))))))))))).................... ( -29.00)
>DroEre_CAF1 6964 92 + 1
GCAGCUGGUGCGGGCAGCGCUAUAAAAGGGC----GCGCAGUCGACGCGCUCAACACAGUUGAAAAGUGUGCGUUGAACAGAACAGUCGUAGGCAG
.((((((((((.....)))).......((((----((((....).)))))))....))))))....((.(((((((.......))).)))).)).. ( -32.90)
>DroYak_CAF1 6414 86 + 1
------GGUGAGGGCAACGCUAUAUAAGGGC----GCGCAGUUAACGCGCUCUACACAGUAGAAAAGUGUGCGUUGAAAAGAACAGACGUAAGCAG
------.((.....((((((......(((((----(((.......))))))))((((.........))))))))))......)).(.(....)).. ( -25.00)
>DroPer_CAF1 5847 90 + 1
UUCGCUGCUGCGAGCAAAACUAUAAAAAGGUUGCUGCGCAG----CUCGCUCGUUACAGUUAUCUGGUGUGCGUUGCAGCGAUACGUCAUAG--UG
.((((((((((((((((..((......)).))))).)))))----)..((.(((..(((....)))....)))..)))))))..........--.. ( -30.20)
>consensus
CCAGCU_GUGCGGGCAGAGCUAUAAAAGGGC____GCGCAGUCAACGCGCUCUACACAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG
........((((......(((.......))).....)))).(((((((((.(..............).)))))))))................... (-13.30 = -13.72 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:15 2006