Locus 5894

Sequence ID 3L_DroMel_CAF1
Location 15,840,729 – 15,840,836
Length 107
Max. P 0.734734
window9393

overview

Window 3

Location 15,840,729 – 15,840,836
Length 107
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 96.36
Mean single sequence MFE -22.13
Consensus MFE -20.00
Energy contribution -20.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 0.43
SVM RNA-class probability 0.734734
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15840729 107 - 23771897
CUCUAAGUGCACCACCA---CCGGCUCCACAAGCCAUCCAAAUUCCCAUUCACACUAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC
......(((((.(....---..((((.....)))).....................................((((.(((.........))).))))).)))))...... ( -20.20)
>DroSec_CAF1 47844 110 - 1
CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC
......(((((.(......(((((((......(.....)((((....)))).....))))))).........((((.(((.........))).))))).)))))...... ( -23.10)
>DroSim_CAF1 49053 110 - 1
CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC
......(((((.(......(((((((......(.....)((((....)))).....))))))).........((((.(((.........))).))))).)))))...... ( -23.10)
>consensus
CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC
......(((((.(.........((((.....)))).....................................((((.(((.........))).))))).)))))...... (-20.00 = -20.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:07 2006