Locus 5877

Sequence ID 3L_DroMel_CAF1
Location 15,819,909 – 15,820,011
Length 102
Max. P 0.641144
window9370

overview

Window 0

Location 15,819,909 – 15,820,011
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.52
Mean single sequence MFE -27.82
Consensus MFE -18.04
Energy contribution -19.88
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -2.41
Structure conservation index 0.65
SVM decision value 0.22
SVM RNA-class probability 0.641144
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15819909 102 + 23771897
UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCACCUUUUCCGCCUGGCUUUUC---ACUGGCCAGGCUGCAA
..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))......((((((((....---...)))))))).))). ( -37.70)
>DroSec_CAF1 27331 99 + 1
UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC---CUGGCUUUUC---ACUGGCCCGGUUGCAA
..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))....(---(.((((....---...)))).))..))). ( -28.50)
>DroSim_CAF1 27918 99 + 1
UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC---CUGGCUUUUC---ACUGGCCCGGUUGCAA
..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))....(---(.((((....---...)))).))..))). ( -28.50)
>DroEre_CAF1 26241 81 + 1
UUAAUUUACAUGCUAAUGGUGGCGAACAUUUUCCCAGCCACCUUGU---UGUCGACG-GUUUUCCGCCUU-UC---CCGGCUUUUC----------------CAA
....((.(((.((....((((((.............))))))..))---))).)).(-(....))(((..-..---..))).....----------------... ( -17.02)
>DroYak_CAF1 68502 98 + 1
UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGU---UGUCGACG-GUUUUCCGCCUUUUC---CCGGCUUUUCACCACUGGCCAGGCUGCAA
..........(((....((((((((((...((..((((......))---))..))..-))))))))))....(---(.((((..........)))).))..))). ( -27.40)
>consensus
UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC___CUGGCUUUUC___ACUGGCCAGGCUGCAA
..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))..........((((..........)))).....))). (-18.04 = -19.88 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:43 2006