| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,813,502 – 15,813,612 |
| Length | 110 |
| Max. P | 0.694306 |
| Location | 15,813,502 – 15,813,612 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.95 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.40 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15813502 110 - 23771897 AUGAUUCAUCAAUC-------AAAUUUCAUCUAUAAUCGUAGCAAAAUGAUUUUAGAUUGCCAUCUCUACCUUUUUAUGGAGUGGAUAU---AUCUUAAACAACAACAAGGCAUAAAUAU .(((((....))))-------)......(((((.((((((......)))))).)))))((((...(((((((......)).)))))((.---....))...........))))....... ( -17.90) >DroSec_CAF1 20864 110 - 1 AUGAUUCAUCAACC-------AGGUUCCAUCUAUAAUCGUAGAAAUAUGAUUUUAGAUUGCCAUCUCUUCCACCUUAUAGAGUGGAUAU---AUCUCAAACAAAAACAAGGCAUAAAUAU ............((-------.(((...(((((.(((((((....))))))).))))).)))......((((((.....).)))))...---.................))......... ( -23.10) >DroSim_CAF1 21395 110 - 1 AUGAUUCAUCAACC-------AAGUUCCAUCUAUAAUCGUAGAAAUAUGAUUUUAGAUUGGCAUCUCUUCCACCUUAUAGAGUGGAUAU---AUCUCAAACAACAACAAGGCAUAAAUAU ............((-------.....(((((((.(((((((....))))))).)))).))).......((((((.....).)))))...---.................))......... ( -20.90) >DroEre_CAF1 20265 116 - 1 GUGAUUCAUCAACCAUUCGCCAAGUGGCAUCUAUAAUCGUACAAAAAUGAUUCUAGAUUGCCACAUCUUCCC-CCCGUAGAGUGGAUGU---AUCUCAAACAACAACAGGGCAUAGAUAU ((((............))))...((((((((((.((((((......)))))).)))).))))))((((...(-((.((....((..((.---....))..))...)).)))...)))).. ( -29.70) >DroYak_CAF1 59341 119 - 1 AUGAUUCAUCAACCAUUCGCCAAGUGCCAUCUAUAAUCGUACAAAAAUGAUUUUAGAUUGCCAUCUCUUCCUCCUCAUAGAGUGGAUGUUGUUUCAGAUACAACAACAGGGCAUA-AUAU .......................((((((((((.((((((......)))))).)))))..(((.((((..........))))))).(((((((........))))))).))))).-.... ( -26.50) >consensus AUGAUUCAUCAACC_______AAGUUCCAUCUAUAAUCGUAGAAAAAUGAUUUUAGAUUGCCAUCUCUUCCACCUUAUAGAGUGGAUAU___AUCUCAAACAACAACAAGGCAUAAAUAU ............................(((((.((((((......)))))).)))))((((..((((..........))))..(((.....)))..............))))....... (-11.96 = -12.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:33 2006