Locus 5864

Sequence ID 3L_DroMel_CAF1
Location 15,809,520 – 15,809,622
Length 102
Max. P 0.692062
window9352

overview

Window 2

Location 15,809,520 – 15,809,622
Length 102
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 92.71
Mean single sequence MFE -21.46
Consensus MFE -15.82
Energy contribution -16.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.74
SVM decision value 0.33
SVM RNA-class probability 0.692062
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15809520 102 + 23771897
GCCACCACCGAAACUGAGUAAA-----AAAAUAUAAUACGCUAUAUA----CGUCGGAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((..-----............((((....----.((.((((.............)))))))))).((((....))))...)))))..)))))) ( -19.62)
>DroSec_CAF1 17116 102 + 1
GCCACCACCGAAACUGAGUAAA-----AAAAUAUACCACGAUAUAUA----CGUCGGUGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((..-----..(((((((((((.......----))).))))))))....................((((....))))...)))))..)))))) ( -24.30)
>DroSim_CAF1 17437 102 + 1
GCCACCACCGAAACUGAGUAAA-----AAAAUAUACCACGAUAUAUA----CGUCGGCGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((..-----..((((..(((((.......----))).))..))))....................((((....))))...)))))..)))))) ( -20.20)
>DroEre_CAF1 16299 105 + 1
GCCACCACCGAAACUGAGUAA------AAAAUAUAAUGCGAUAUAUACAGACGUCGGAGUGUUGCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((.------..........(((((..........)))((((.((((....))))))))....)).((((....))))...)))))..)))))) ( -20.70)
>DroYak_CAF1 55361 107 + 1
GCCACCACCGAAACUGAGUAAAACUAAAAAAUAUAAUGCGAUAUAUA----CGUCGCAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((.........(((((..((((((.....----.)))))))))))....................((((....))))...)))))..)))))) ( -22.50)
>consensus
GCCACCACCGAAACUGAGUAAA_____AAAAUAUAAUACGAUAUAUA____CGUCGGAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG
.......((((((..(((((.........(((((....((((..........))))..)))))....................((((....))))...)))))..)))))) (-15.82 = -16.02 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:26 2006